miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2683 3' -54 NC_001491.2 + 4912 0.66 0.951919
Target:  5'- cGGcCCGGGAGAGCCGgcgGCc--GACg -3'
miRNA:   3'- uCC-GGCCCUUUUGGUagaCGaacCUG- -5'
2683 3' -54 NC_001491.2 + 5331 0.66 0.947633
Target:  5'- gGGuGCCGGGGAcGCCg---GCU-GGGCg -3'
miRNA:   3'- -UC-CGGCCCUUuUGGuagaCGAaCCUG- -5'
2683 3' -54 NC_001491.2 + 69526 0.66 0.943102
Target:  5'- aAGcCCGGGAAGAgcccCCAagUGCUcgGGGCa -3'
miRNA:   3'- -UCcGGCCCUUUU----GGUagACGAa-CCUG- -5'
2683 3' -54 NC_001491.2 + 27291 0.66 0.933295
Target:  5'- cGGCCaucGGGGAGCCGUUg---UGGACg -3'
miRNA:   3'- uCCGGc--CCUUUUGGUAGacgaACCUG- -5'
2683 3' -54 NC_001491.2 + 57201 0.67 0.928015
Target:  5'- uGGCUGGGAuuuuguaaGGGCCuggUUGCUUGaaGACg -3'
miRNA:   3'- uCCGGCCCU--------UUUGGua-GACGAAC--CUG- -5'
2683 3' -54 NC_001491.2 + 97010 0.67 0.928015
Target:  5'- cGGcGUCGGGAGGGCCGUggGCUaccagGGAg -3'
miRNA:   3'- -UC-CGGCCCUUUUGGUAgaCGAa----CCUg -5'
2683 3' -54 NC_001491.2 + 33905 0.67 0.922484
Target:  5'- gGGGcCCGGGcccGGGCC-UCgGCcUGGACg -3'
miRNA:   3'- -UCC-GGCCCu--UUUGGuAGaCGaACCUG- -5'
2683 3' -54 NC_001491.2 + 63909 0.67 0.910668
Target:  5'- cAGGCUGGGAA-GCCAagaUCUGUgguaGGGu -3'
miRNA:   3'- -UCCGGCCCUUuUGGU---AGACGaa--CCUg -5'
2683 3' -54 NC_001491.2 + 2731 0.67 0.904386
Target:  5'- uGGcCCGGGguGGCCAccCUGCgcuuggGGGCc -3'
miRNA:   3'- uCC-GGCCCuuUUGGUa-GACGaa----CCUG- -5'
2683 3' -54 NC_001491.2 + 34188 0.67 0.897858
Target:  5'- aGGcGCCGGGGcuacGAccGCCAcCUGCUgccGGGCc -3'
miRNA:   3'- -UC-CGGCCCU----UU--UGGUaGACGAa--CCUG- -5'
2683 3' -54 NC_001491.2 + 40067 0.69 0.85374
Target:  5'- aAGGcCCGGGGGAACCA-CUGCa----- -3'
miRNA:   3'- -UCC-GGCCCUUUUGGUaGACGaaccug -5'
2683 3' -54 NC_001491.2 + 91783 0.69 0.85374
Target:  5'- cGGCCGGGuuagacccGAGCCG-CUGCagcaccucUGGGCa -3'
miRNA:   3'- uCCGGCCCu-------UUUGGUaGACGa-------ACCUG- -5'
2683 3' -54 NC_001491.2 + 5146 0.69 0.828751
Target:  5'- gAGGCCGaGGAuggAAACUcgggCUGCggGGACc -3'
miRNA:   3'- -UCCGGC-CCU---UUUGGua--GACGaaCCUG- -5'
2683 3' -54 NC_001491.2 + 28883 0.69 0.820034
Target:  5'- uGGGCCGGGGucGCCGgagcuggggUUGCU-GGAg -3'
miRNA:   3'- -UCCGGCCCUuuUGGUa--------GACGAaCCUg -5'
2683 3' -54 NC_001491.2 + 25127 0.7 0.80207
Target:  5'- cGGCCGGGggGGCCGccaacUCcagcgGCgaGGAg -3'
miRNA:   3'- uCCGGCCCuuUUGGU-----AGa----CGaaCCUg -5'
2683 3' -54 NC_001491.2 + 2947 0.71 0.72451
Target:  5'- uGGGCCGGGGAGgcgGCCGcCUGaggGGAg -3'
miRNA:   3'- -UCCGGCCCUUU---UGGUaGACgaaCCUg -5'
2683 3' -54 NC_001491.2 + 28833 0.72 0.652071
Target:  5'- uGGGCCGGGGucGCCGgagCUGggcUGGGCc -3'
miRNA:   3'- -UCCGGCCCUuuUGGUa--GACga-ACCUG- -5'
2683 3' -54 NC_001491.2 + 37242 0.73 0.610099
Target:  5'- cGGGCUGGGggGGCCAggcucUCU-CUcGGGCg -3'
miRNA:   3'- -UCCGGCCCuuUUGGU-----AGAcGAaCCUG- -5'
2683 3' -54 NC_001491.2 + 2479 0.74 0.568401
Target:  5'- cGGGCCGGGggG-CCG-CUGCagcGGGCc -3'
miRNA:   3'- -UCCGGCCCuuUuGGUaGACGaa-CCUG- -5'
2683 3' -54 NC_001491.2 + 85493 0.77 0.421693
Target:  5'- cGGCUGGGGAAACCGcggccUCgGCgUGGGCa -3'
miRNA:   3'- uCCGGCCCUUUUGGU-----AGaCGaACCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.