miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2683 5' -55.4 NC_001491.2 + 34558 0.66 0.912628
Target:  5'- gAGGGCCccgaccgucGGGGCGGAUucaggcGcgUUCCCCg -3'
miRNA:   3'- -UUCCGGua-------CUCCGUCUA------CuaAGGGGG- -5'
2683 5' -55.4 NC_001491.2 + 51691 0.66 0.906462
Target:  5'- uAGGCUAcGGGGUuGAUGugcugcagCCCCCc -3'
miRNA:   3'- uUCCGGUaCUCCGuCUACuaa-----GGGGG- -5'
2683 5' -55.4 NC_001491.2 + 28777 0.66 0.906462
Target:  5'- uGGGCCAUGcGGCAGGauccgUCgcacgCCCCg -3'
miRNA:   3'- uUCCGGUACuCCGUCUacua-AG-----GGGG- -5'
2683 5' -55.4 NC_001491.2 + 115806 0.66 0.900053
Target:  5'- -cGGCCGUcgcauGGGCAGA-GAgcgCCCCg -3'
miRNA:   3'- uuCCGGUAc----UCCGUCUaCUaa-GGGGg -5'
2683 5' -55.4 NC_001491.2 + 97291 0.66 0.893401
Target:  5'- -uGGCCAUGcgaaAGGCGG-UGAgggcgcgaaUCCCCa -3'
miRNA:   3'- uuCCGGUAC----UCCGUCuACUa--------AGGGGg -5'
2683 5' -55.4 NC_001491.2 + 3139 0.66 0.886512
Target:  5'- uGGGCCAcaGGGGCGGcagGGUcugaaggcUCCCCUc -3'
miRNA:   3'- uUCCGGUa-CUCCGUCua-CUA--------AGGGGG- -5'
2683 5' -55.4 NC_001491.2 + 19891 0.67 0.847851
Target:  5'- -cGGUCGagucagacucuguUGAGGCAGAUGA--CCCUg -3'
miRNA:   3'- uuCCGGU-------------ACUCCGUCUACUaaGGGGg -5'
2683 5' -55.4 NC_001491.2 + 88276 0.67 0.840454
Target:  5'- uAGGCgGUG-GGCAGGUGuaaaagUCUCCa -3'
miRNA:   3'- uUCCGgUACuCCGUCUACua----AGGGGg -5'
2683 5' -55.4 NC_001491.2 + 37638 0.68 0.820839
Target:  5'- uAGGCCAauUGGGGgGGGggugUGGUgguaaauagcggcaUCCCCCc -3'
miRNA:   3'- uUCCGGU--ACUCCgUCU----ACUA--------------AGGGGG- -5'
2683 5' -55.4 NC_001491.2 + 24646 0.68 0.796618
Target:  5'- -cGGCCGUcgGAGGgGGggGAUgcgCgCCCCg -3'
miRNA:   3'- uuCCGGUA--CUCCgUCuaCUAa--G-GGGG- -5'
2683 5' -55.4 NC_001491.2 + 139427 0.69 0.768392
Target:  5'- gAGGGCCGcGAGGCAGGUG--UCCg-- -3'
miRNA:   3'- -UUCCGGUaCUCCGUCUACuaAGGggg -5'
2683 5' -55.4 NC_001491.2 + 28731 0.69 0.764537
Target:  5'- gGGGGUCAgggacgggaugagGGGGCuGGUGGacggcgUCCCCCg -3'
miRNA:   3'- -UUCCGGUa------------CUCCGuCUACUa-----AGGGGG- -5'
2683 5' -55.4 NC_001491.2 + 68968 0.69 0.758719
Target:  5'- uGGGCCcUGGGGCccaAGgcGAUUCCCg- -3'
miRNA:   3'- uUCCGGuACUCCG---UCuaCUAAGGGgg -5'
2683 5' -55.4 NC_001491.2 + 59933 1.1 0.002202
Target:  5'- aAAGGCCAUGAGGCAGAUGAUUCCCCCg -3'
miRNA:   3'- -UUCCGGUACUCCGUCUACUAAGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.