Results 21 - 35 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26830 | 3' | -57.1 | NC_005809.1 | + | 4459 | 0.68 | 0.418446 |
Target: 5'- uGGCACCGUCAuGCACaacgaccguGUuCUUGUCGGu -3' miRNA: 3'- cUCGUGGCAGU-CGUG---------CGuGGACAGCU- -5' |
|||||||
26830 | 3' | -57.1 | NC_005809.1 | + | 33186 | 0.67 | 0.437786 |
Target: 5'- uGGGCGCCcUCGGCACGgcCACCgcuggCGAa -3' miRNA: 3'- -CUCGUGGcAGUCGUGC--GUGGaca--GCU- -5' |
|||||||
26830 | 3' | -57.1 | NC_005809.1 | + | 37016 | 0.68 | 0.428052 |
Target: 5'- uGGCGCCGUCgauaccguGGCGgGCgACCUGggCGGa -3' miRNA: 3'- cUCGUGGCAG--------UCGUgCG-UGGACa-GCU- -5' |
|||||||
26830 | 3' | -57.1 | NC_005809.1 | + | 14786 | 0.67 | 0.477943 |
Target: 5'- cGGCugCG-CGGCGCGCGCUucguguacgUGUcCGAg -3' miRNA: 3'- cUCGugGCaGUCGUGCGUGG---------ACA-GCU- -5' |
|||||||
26830 | 3' | -57.1 | NC_005809.1 | + | 6703 | 0.66 | 0.498691 |
Target: 5'- aGGCACaccuuGUCcugGGCGCGCAUCUGcUUGAg -3' miRNA: 3'- cUCGUGg----CAG---UCGUGCGUGGAC-AGCU- -5' |
|||||||
26830 | 3' | -57.1 | NC_005809.1 | + | 19738 | 0.66 | 0.530534 |
Target: 5'- -cGCGCUGUCGGCugucggcaGCGCGgCgaaGUCGGg -3' miRNA: 3'- cuCGUGGCAGUCG--------UGCGUgGa--CAGCU- -5' |
|||||||
26830 | 3' | -57.1 | NC_005809.1 | + | 29089 | 0.66 | 0.530534 |
Target: 5'- aGGCGCgGUCGGCAuCGC-CCagGUCa- -3' miRNA: 3'- cUCGUGgCAGUCGU-GCGuGGa-CAGcu -5' |
|||||||
26830 | 3' | -57.1 | NC_005809.1 | + | 19479 | 0.68 | 0.422273 |
Target: 5'- uGGGCGCCGcCguuggcgucggggcgAGCAUGUACaUGUCGAa -3' miRNA: 3'- -CUCGUGGCaG---------------UCGUGCGUGgACAGCU- -5' |
|||||||
26830 | 3' | -57.1 | NC_005809.1 | + | 28153 | 0.68 | 0.418446 |
Target: 5'- cGGUGCCG-CAG-GCGCGCCUGgCGAc -3' miRNA: 3'- cUCGUGGCaGUCgUGCGUGGACaGCU- -5' |
|||||||
26830 | 3' | -57.1 | NC_005809.1 | + | 3566 | 0.69 | 0.372453 |
Target: 5'- -cGCGCCGcauaaauuUCAGCgACGCGCCggGUCa- -3' miRNA: 3'- cuCGUGGC--------AGUCG-UGCGUGGa-CAGcu -5' |
|||||||
26830 | 3' | -57.1 | NC_005809.1 | + | 14875 | 0.69 | 0.355043 |
Target: 5'- cGAGcCGCUGcCGGCGCGCgGCCUGUa-- -3' miRNA: 3'- -CUC-GUGGCaGUCGUGCG-UGGACAgcu -5' |
|||||||
26830 | 3' | -57.1 | NC_005809.1 | + | 5109 | 0.7 | 0.314075 |
Target: 5'- cAGCGuCCGgugCGGCugGCGCC-GUUGAa -3' miRNA: 3'- cUCGU-GGCa--GUCGugCGUGGaCAGCU- -5' |
|||||||
26830 | 3' | -57.1 | NC_005809.1 | + | 391 | 0.76 | 0.119106 |
Target: 5'- uGAGCGCgGcCAGCGCGCGaCUGUUGAg -3' miRNA: 3'- -CUCGUGgCaGUCGUGCGUgGACAGCU- -5' |
|||||||
26830 | 3' | -57.1 | NC_005809.1 | + | 37195 | 1.08 | 0.000484 |
Target: 5'- uGAGCACCGUCAGCACGCACCUGUCGAg -3' miRNA: 3'- -CUCGUGGCAGUCGUGCGUGGACAGCU- -5' |
|||||||
26830 | 3' | -57.1 | NC_005809.1 | + | 25188 | 0.66 | 0.530534 |
Target: 5'- aAGCGgugCGUCGGCGCGaugcaggcaUACCUGUCGc -3' miRNA: 3'- cUCGUg--GCAGUCGUGC---------GUGGACAGCu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home