miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26830 5' -53.1 NC_005809.1 + 35325 0.7 0.521231
Target:  5'- ---gGCCGGCGACAUCGGCccgcGCcaGUGGc -3'
miRNA:   3'- acagCGGUUGCUGUAGCUGu---CG--CACC- -5'
26830 5' -53.1 NC_005809.1 + 33078 0.72 0.458257
Target:  5'- gGUCGCgCAGCGACG-CGGCGGCc--- -3'
miRNA:   3'- aCAGCG-GUUGCUGUaGCUGUCGcacc -5'
26830 5' -53.1 NC_005809.1 + 35195 0.72 0.418607
Target:  5'- cGggCGUCAACGACGUgauucaCGACcuGGCGUGGc -3'
miRNA:   3'- aCa-GCGGUUGCUGUA------GCUG--UCGCACC- -5'
26830 5' -53.1 NC_005809.1 + 19470 0.72 0.438175
Target:  5'- cUGUCGCCGugGGCGccgcCGuuGGCGUcGGg -3'
miRNA:   3'- -ACAGCGGUugCUGUa---GCugUCGCA-CC- -5'
26830 5' -53.1 NC_005809.1 + 27291 0.71 0.47882
Target:  5'- cUGUCGCCGaaAUGGgG-CGACAGCG-GGc -3'
miRNA:   3'- -ACAGCGGU--UGCUgUaGCUGUCGCaCC- -5'
26830 5' -53.1 NC_005809.1 + 36158 0.71 0.499826
Target:  5'- aGgCGCCAACGACAUgGGCcGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAgCUGuCGCacc -5'
26830 5' -53.1 NC_005809.1 + 7511 0.7 0.54737
Target:  5'- gGUUGCCGaggAUGGCGuugucuaccgugcgcUCGGCGGCGUGc -3'
miRNA:   3'- aCAGCGGU---UGCUGU---------------AGCUGUCGCACc -5'
26830 5' -53.1 NC_005809.1 + 14346 0.7 0.553971
Target:  5'- aGUCcgacCCGcGCGugGUCGuCGGCGUGGc -3'
miRNA:   3'- aCAGc---GGU-UGCugUAGCuGUCGCACC- -5'
26830 5' -53.1 NC_005809.1 + 40421 0.7 0.553971
Target:  5'- -uUCGCCAACGuguaCGGCGGCGcGGu -3'
miRNA:   3'- acAGCGGUUGCuguaGCUGUCGCaCC- -5'
26830 5' -53.1 NC_005809.1 + 23397 0.7 0.576136
Target:  5'- cGaCGCCGGCGGCAcgGGCAGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUagCUGUCGCacc -5'
26830 5' -53.1 NC_005809.1 + 38926 0.72 0.415717
Target:  5'- gGUUGCUuguggacgugggguAACGAguUCGGCGGCGUGa -3'
miRNA:   3'- aCAGCGG--------------UUGCUguAGCUGUCGCACc -5'
26830 5' -53.1 NC_005809.1 + 19028 0.73 0.399579
Target:  5'- aUGUCgGCCGAgGcCAUCGACcGCGUGc -3'
miRNA:   3'- -ACAG-CGGUUgCuGUAGCUGuCGCACc -5'
26830 5' -53.1 NC_005809.1 + 8202 0.66 0.794675
Target:  5'- -uUCGUCAGCGACAU-GGCGGCc--- -3'
miRNA:   3'- acAGCGGUUGCUGUAgCUGUCGcacc -5'
26830 5' -53.1 NC_005809.1 + 36579 0.8 0.135349
Target:  5'- cGUCGCCAuuuugaGCGACGcaGACGGUGUGGa -3'
miRNA:   3'- aCAGCGGU------UGCUGUagCUGUCGCACC- -5'
26830 5' -53.1 NC_005809.1 + 7592 0.78 0.18425
Target:  5'- aGUCGUCGGCGACgGUgGACAGCacGUGGu -3'
miRNA:   3'- aCAGCGGUUGCUG-UAgCUGUCG--CACC- -5'
26830 5' -53.1 NC_005809.1 + 27739 0.78 0.19467
Target:  5'- gGcCGCCAACGGCAUCGACcugGGCGa-- -3'
miRNA:   3'- aCaGCGGUUGCUGUAGCUG---UCGCacc -5'
26830 5' -53.1 NC_005809.1 + 30141 0.76 0.261528
Target:  5'- ---gGUCGGCGACAUCGACAGCGc-- -3'
miRNA:   3'- acagCGGUUGCUGUAGCUGUCGCacc -5'
26830 5' -53.1 NC_005809.1 + 41275 0.76 0.268455
Target:  5'- cGUCGCCcugGGCG-CGGCGGUGUGGg -3'
miRNA:   3'- aCAGCGGuugCUGUaGCUGUCGCACC- -5'
26830 5' -53.1 NC_005809.1 + 34061 0.75 0.305312
Target:  5'- -uUCGCCGGCGACAUCaagGGCAucGaCGUGGa -3'
miRNA:   3'- acAGCGGUUGCUGUAG---CUGU--C-GCACC- -5'
26830 5' -53.1 NC_005809.1 + 37262 0.74 0.329229
Target:  5'- cGUgGCCGGCGACcuggaaaauAUCGACGcCGUGGc -3'
miRNA:   3'- aCAgCGGUUGCUG---------UAGCUGUcGCACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.