Results 41 - 60 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26830 | 5' | -53.1 | NC_005809.1 | + | 20609 | 0.69 | 0.632228 |
Target: 5'- -uUCGCCAgGCGGCGUCGcagguCGGUGUcGGc -3' miRNA: 3'- acAGCGGU-UGCUGUAGCu----GUCGCA-CC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 5335 | 0.69 | 0.620969 |
Target: 5'- cGUgGCgCAGCauGGCAUCGcGCuGCGUGGc -3' miRNA: 3'- aCAgCG-GUUG--CUGUAGC-UGuCGCACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 28668 | 0.69 | 0.609721 |
Target: 5'- --gUGCCGGCGGCcUCGcCAGCGcGGc -3' miRNA: 3'- acaGCGGUUGCUGuAGCuGUCGCaCC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 9847 | 0.69 | 0.598493 |
Target: 5'- -cUCGgUuuCGGCGUCGAUgAGCGUGGc -3' miRNA: 3'- acAGCgGuuGCUGUAGCUG-UCGCACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 19215 | 0.69 | 0.598492 |
Target: 5'- --aCGCCAcCGuguuCAUCGGCGGCGaGGc -3' miRNA: 3'- acaGCGGUuGCu---GUAGCUGUCGCaCC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 28558 | 0.69 | 0.597372 |
Target: 5'- gGcCGCCGgccaucgcggcGCGcACGUCGgccaccgGCAGCGUGGu -3' miRNA: 3'- aCaGCGGU-----------UGC-UGUAGC-------UGUCGCACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 23397 | 0.7 | 0.576136 |
Target: 5'- cGaCGCCGGCGGCAcgGGCAGCGa-- -3' miRNA: 3'- aCaGCGGUUGCUGUagCUGUCGCacc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 28039 | 0.7 | 0.565025 |
Target: 5'- cGUCGCCGaagaacacgucgGCGACGgucugcUCGAaCAGCG-GGc -3' miRNA: 3'- aCAGCGGU------------UGCUGU------AGCU-GUCGCaCC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 40863 | 0.7 | 0.565025 |
Target: 5'- uUGUCGCCAcCGACA-CGAUGGaCGaauUGGu -3' miRNA: 3'- -ACAGCGGUuGCUGUaGCUGUC-GC---ACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 37669 | 0.7 | 0.558386 |
Target: 5'- cGUCGCCGACcugucgaACAUCGAaggacgcaugauuGCGUGGc -3' miRNA: 3'- aCAGCGGUUGc------UGUAGCUgu-----------CGCACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 12028 | 0.7 | 0.553972 |
Target: 5'- cGUgGCCGGCGAgGUCuugccCAGCGUGu -3' miRNA: 3'- aCAgCGGUUGCUgUAGcu---GUCGCACc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 40421 | 0.7 | 0.553971 |
Target: 5'- -uUCGCCAACGuguaCGGCGGCGcGGu -3' miRNA: 3'- acAGCGGUUGCuguaGCUGUCGCaCC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 14346 | 0.7 | 0.553971 |
Target: 5'- aGUCcgacCCGcGCGugGUCGuCGGCGUGGc -3' miRNA: 3'- aCAGc---GGU-UGCugUAGCuGUCGCACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 7511 | 0.7 | 0.54737 |
Target: 5'- gGUUGCCGaggAUGGCGuugucuaccgugcgcUCGGCGGCGUGc -3' miRNA: 3'- aCAGCGGU---UGCUGU---------------AGCUGUCGCACc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 29961 | 0.7 | 0.542983 |
Target: 5'- uUGUCGUC-GCGGCGcaCGACGGCcUGGa -3' miRNA: 3'- -ACAGCGGuUGCUGUa-GCUGUCGcACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 22072 | 0.7 | 0.53098 |
Target: 5'- gGUCGCgGucggcgcGCGGC-UCGAUGGCGUGa -3' miRNA: 3'- aCAGCGgU-------UGCUGuAGCUGUCGCACc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 35325 | 0.7 | 0.521231 |
Target: 5'- ---gGCCGGCGACAUCGGCccgcGCcaGUGGc -3' miRNA: 3'- acagCGGUUGCUGUAGCUGu---CG--CACC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 36158 | 0.71 | 0.499826 |
Target: 5'- aGgCGCCAACGACAUgGGCcGCGa-- -3' miRNA: 3'- aCaGCGGUUGCUGUAgCUGuCGCacc -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 27291 | 0.71 | 0.47882 |
Target: 5'- cUGUCGCCGaaAUGGgG-CGACAGCG-GGc -3' miRNA: 3'- -ACAGCGGU--UGCUgUaGCUGUCGCaCC- -5' |
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26830 | 5' | -53.1 | NC_005809.1 | + | 33078 | 0.72 | 0.458257 |
Target: 5'- gGUCGCgCAGCGACG-CGGCGGCc--- -3' miRNA: 3'- aCAGCG-GUUGCUGUaGCUGUCGcacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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