Results 21 - 40 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26831 | 3' | -54.6 | NC_005809.1 | + | 37242 | 0.67 | 0.593157 |
Target: 5'- gACAUCGACaG-CGUGGUauccgugGCCGGCGAc -3' miRNA: 3'- -UGUAGCUG-CgGCACCGa------UGGUUGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 18815 | 0.67 | 0.604348 |
Target: 5'- cGCAUCGGC-CCgGUGGC-GCCGGCa-- -3' miRNA: 3'- -UGUAGCUGcGG-CACCGaUGGUUGcuc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 25803 | 0.67 | 0.615564 |
Target: 5'- cCAUCGccuucacguCGCCgGUGGCUacGCCcACGAGc -3' miRNA: 3'- uGUAGCu--------GCGG-CACCGA--UGGuUGCUC- -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 27726 | 0.67 | 0.626795 |
Target: 5'- aGCGUgCGGCGC--UGGCcGCCAACGGc -3' miRNA: 3'- -UGUA-GCUGCGgcACCGaUGGUUGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 37021 | 0.67 | 0.638031 |
Target: 5'- cCGUCGAUaCCGUGGCgggcgACCuggGCGGa -3' miRNA: 3'- uGUAGCUGcGGCACCGa----UGGu--UGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 8455 | 0.66 | 0.660475 |
Target: 5'- gAUGUCGGCGUCGaGGUgGCCuGCGAu -3' miRNA: 3'- -UGUAGCUGCGGCaCCGaUGGuUGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 8977 | 0.66 | 0.660475 |
Target: 5'- cCAgCGugGCCGUGccGCgauaGCCAGCGGu -3' miRNA: 3'- uGUaGCugCGGCAC--CGa---UGGUUGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 33799 | 0.66 | 0.671661 |
Target: 5'- cCAUCGuGCGCCGcGuGCUGCCcgaAGCGGc -3' miRNA: 3'- uGUAGC-UGCGGCaC-CGAUGG---UUGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 13804 | 0.66 | 0.682809 |
Target: 5'- aGCG-CGACGCCGUGcGC-GCCGA-GAa -3' miRNA: 3'- -UGUaGCUGCGGCAC-CGaUGGUUgCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 27597 | 0.67 | 0.593157 |
Target: 5'- ---cCGACGCCauucUGGCgACCGGCGAc -3' miRNA: 3'- uguaGCUGCGGc---ACCGaUGGUUGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 17030 | 0.68 | 0.582001 |
Target: 5'- uCAUCGGCuaCGgggGcGCUGCCGGCGGc -3' miRNA: 3'- uGUAGCUGcgGCa--C-CGAUGGUUGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 37281 | 0.78 | 0.141831 |
Target: 5'- aAUAUCGACGCCGUGGCcgaCAACGc- -3' miRNA: 3'- -UGUAGCUGCGGCACCGaugGUUGCuc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 36990 | 0.74 | 0.272657 |
Target: 5'- gACAUCGACaCgGUGGCgGCCAGCGu- -3' miRNA: 3'- -UGUAGCUGcGgCACCGaUGGUUGCuc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 20288 | 0.73 | 0.320969 |
Target: 5'- gACuUCGACGCCGUGGUcuaUcaccauucgcugacgGCCGGCGAa -3' miRNA: 3'- -UGuAGCUGCGGCACCG---A---------------UGGUUGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 23393 | 0.72 | 0.342349 |
Target: 5'- uCAUCGACGCCGgcGGCacgGgCAGCGAc -3' miRNA: 3'- uGUAGCUGCGGCa-CCGa--UgGUUGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 32922 | 0.71 | 0.386287 |
Target: 5'- cCAgCGGuucCGCCGUGGCUGCuCAACGuGu -3' miRNA: 3'- uGUaGCU---GCGGCACCGAUG-GUUGCuC- -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 16965 | 0.7 | 0.424015 |
Target: 5'- cGCcgCGcCGCCGUGGUUGCCAcuGCcuGGGc -3' miRNA: 3'- -UGuaGCuGCGGCACCGAUGGU--UG--CUC- -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 26132 | 0.69 | 0.494992 |
Target: 5'- ---aCGACGCCGUGuucaacGCcGCCGGCGAu -3' miRNA: 3'- uguaGCUGCGGCAC------CGaUGGUUGCUc -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 2844 | 0.68 | 0.537893 |
Target: 5'- cGCAgCGGCGCCa--GC-ACCAGCGAGg -3' miRNA: 3'- -UGUaGCUGCGGcacCGaUGGUUGCUC- -5' |
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26831 | 3' | -54.6 | NC_005809.1 | + | 26718 | 0.68 | 0.559826 |
Target: 5'- -gAUCGGCG-CGUGGC-ACCAGCa-- -3' miRNA: 3'- ugUAGCUGCgGCACCGaUGGUUGcuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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