miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26831 5' -60.5 NC_005809.1 + 11407 0.66 0.389446
Target:  5'- -cCAgGGUcuugagcagcGGCGaGCCGGCGUgcaggucgccgauaaGGCGCg -3'
miRNA:   3'- cuGUgCCA----------CCGC-CGGUCGCAa--------------CCGCG- -5'
26831 5' -60.5 NC_005809.1 + 21246 0.66 0.388558
Target:  5'- gGGCGCGGUGGcCGGCaucaAGCccgaaGUGCu -3'
miRNA:   3'- -CUGUGCCACC-GCCGg---UCGcaac-CGCG- -5'
26831 5' -60.5 NC_005809.1 + 30674 0.66 0.379748
Target:  5'- cGCugGGUguaGGCGGCgggaauuguCGGUGUugUGGCGg -3'
miRNA:   3'- cUGugCCA---CCGCCG---------GUCGCA--ACCGCg -5'
26831 5' -60.5 NC_005809.1 + 19344 0.66 0.379748
Target:  5'- aGGCGCGGUcGGUGGCCgaGGCcgaGGC-Cg -3'
miRNA:   3'- -CUGUGCCA-CCGCCGG--UCGcaaCCGcG- -5'
26831 5' -60.5 NC_005809.1 + 39644 0.66 0.379748
Target:  5'- cGACGCGGUGuG-GGCCGGCaugGGaauggGCa -3'
miRNA:   3'- -CUGUGCCAC-CgCCGGUCGcaaCCg----CG- -5'
26831 5' -60.5 NC_005809.1 + 9303 0.66 0.379748
Target:  5'- uGACuuccuCGGcgaccUGGCGGCgCA-CGUcGGCGCg -3'
miRNA:   3'- -CUGu----GCC-----ACCGCCG-GUcGCAaCCGCG- -5'
26831 5' -60.5 NC_005809.1 + 34184 0.66 0.377131
Target:  5'- cGACACGuG-GGCGGCgauucucgaagauuCGagcGCGgcGGCGCa -3'
miRNA:   3'- -CUGUGC-CaCCGCCG--------------GU---CGCaaCCGCG- -5'
26831 5' -60.5 NC_005809.1 + 27633 0.66 0.374527
Target:  5'- gGGC-CGGUGGuUGGUCGGCaugaaagcuacccagGUgGGCGCc -3'
miRNA:   3'- -CUGuGCCACC-GCCGGUCG---------------CAaCCGCG- -5'
26831 5' -60.5 NC_005809.1 + 29029 0.66 0.371073
Target:  5'- gGGCAcCGaGUcaGGCGGCCGacaGUUcGGCGCg -3'
miRNA:   3'- -CUGU-GC-CA--CCGCCGGUcg-CAA-CCGCG- -5'
26831 5' -60.5 NC_005809.1 + 41877 0.66 0.362534
Target:  5'- --gGCGGUaucuugGGCGGcCCGGCc--GGCGCc -3'
miRNA:   3'- cugUGCCA------CCGCC-GGUCGcaaCCGCG- -5'
26831 5' -60.5 NC_005809.1 + 3738 0.66 0.362534
Target:  5'- cACGcCGGUGGUGGgCA-CGUcGGUGCc -3'
miRNA:   3'- cUGU-GCCACCGCCgGUcGCAaCCGCG- -5'
26831 5' -60.5 NC_005809.1 + 28758 0.66 0.362534
Target:  5'- aGCGCGGUgcgcuucucGGCGcGCaCGGCGUc-GCGCu -3'
miRNA:   3'- cUGUGCCA---------CCGC-CG-GUCGCAacCGCG- -5'
26831 5' -60.5 NC_005809.1 + 3573 0.66 0.354966
Target:  5'- gGGCugGGcguacaccgauccgcGGCcGCCAGUGUUGGcCGUg -3'
miRNA:   3'- -CUGugCCa--------------CCGcCGGUCGCAACC-GCG- -5'
26831 5' -60.5 NC_005809.1 + 27434 0.66 0.354132
Target:  5'- -cCGCGcccGGCGGCCgcaGGCccUGGCGCu -3'
miRNA:   3'- cuGUGCca-CCGCCGG---UCGcaACCGCG- -5'
26831 5' -60.5 NC_005809.1 + 38695 0.66 0.345869
Target:  5'- cGGCgACGGcagcGCGGCCuacAGCGacGGCGCc -3'
miRNA:   3'- -CUG-UGCCac--CGCCGG---UCGCaaCCGCG- -5'
26831 5' -60.5 NC_005809.1 + 9098 0.67 0.336137
Target:  5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26831 5' -60.5 NC_005809.1 + 9338 0.67 0.336137
Target:  5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26831 5' -60.5 NC_005809.1 + 9146 0.67 0.336137
Target:  5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26831 5' -60.5 NC_005809.1 + 9194 0.67 0.336137
Target:  5'- --aGCGGUGGCcgugccggauucGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5'
26831 5' -60.5 NC_005809.1 + 9050 0.67 0.336137
Target:  5'- --aGCGGUGGCcgugccguaauuGCCAGCGgUGGcCGUg -3'
miRNA:   3'- cugUGCCACCGc-----------CGGUCGCaACC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.