miRNA display CGI


Results 1 - 20 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26831 5' -60.5 NC_005809.1 + 41877 0.66 0.362534
Target:  5'- --gGCGGUaucuugGGCGGcCCGGCc--GGCGCc -3'
miRNA:   3'- cugUGCCA------CCGCC-GGUCGcaaCCGCG- -5'
26831 5' -60.5 NC_005809.1 + 39644 0.66 0.379748
Target:  5'- cGACGCGGUGuG-GGCCGGCaugGGaauggGCa -3'
miRNA:   3'- -CUGUGCCAC-CgCCGGUCGcaaCCg----CG- -5'
26831 5' -60.5 NC_005809.1 + 39025 0.67 0.32976
Target:  5'- cGGCGCGGuUGGCGGgaCuGCGcgGuGUGCg -3'
miRNA:   3'- -CUGUGCC-ACCGCCg-GuCGCaaC-CGCG- -5'
26831 5' -60.5 NC_005809.1 + 38980 0.7 0.214597
Target:  5'- uACACGGccaacacUGGCGGCC-GCGgaucGGUGUa -3'
miRNA:   3'- cUGUGCC-------ACCGCCGGuCGCaa--CCGCG- -5'
26831 5' -60.5 NC_005809.1 + 38695 0.66 0.345869
Target:  5'- cGGCgACGGcagcGCGGCCuacAGCGacGGCGCc -3'
miRNA:   3'- -CUG-UGCCac--CGCCGG---UCGCaaCCGCG- -5'
26831 5' -60.5 NC_005809.1 + 38553 0.73 0.132752
Target:  5'- cGCGCGGcaugacgcUGGUGGCCGGCGcguuuugGGCGg -3'
miRNA:   3'- cUGUGCC--------ACCGCCGGUCGCaa-----CCGCg -5'
26831 5' -60.5 NC_005809.1 + 37216 0.72 0.152171
Target:  5'- gGGCGCGGUgcaGGCGGCCAcGCa---GCGCg -3'
miRNA:   3'- -CUGUGCCA---CCGCCGGU-CGcaacCGCG- -5'
26831 5' -60.5 NC_005809.1 + 37040 0.74 0.109388
Target:  5'- cGACcuggGCGGaaccugGGCGGCCGGCGUguccuacgacuuUGGCaGCa -3'
miRNA:   3'- -CUG----UGCCa-----CCGCCGGUCGCA------------ACCG-CG- -5'
26831 5' -60.5 NC_005809.1 + 36995 1.1 0.000181
Target:  5'- cGACACGGUGGCGGCCAGCGUUGGCGCc -3'
miRNA:   3'- -CUGUGCCACCGCCGGUCGCAACCGCG- -5'
26831 5' -60.5 NC_005809.1 + 34184 0.66 0.377131
Target:  5'- cGACACGuG-GGCGGCgauucucgaagauuCGagcGCGgcGGCGCa -3'
miRNA:   3'- -CUGUGC-CaCCGCCG--------------GU---CGCaaCCGCG- -5'
26831 5' -60.5 NC_005809.1 + 33930 0.69 0.231965
Target:  5'- cGAUACGGc-GCGGCCuggGGCGUUuccgaagGGCGUa -3'
miRNA:   3'- -CUGUGCCacCGCCGG---UCGCAA-------CCGCG- -5'
26831 5' -60.5 NC_005809.1 + 32039 0.68 0.270924
Target:  5'- uGCGC-GUGGCGGCggaaAGCGUggccGGCGg -3'
miRNA:   3'- cUGUGcCACCGCCGg---UCGCAa---CCGCg -5'
26831 5' -60.5 NC_005809.1 + 31097 0.67 0.306648
Target:  5'- cACcuCGGU-GCaGGCCGGCGagUGGUGCg -3'
miRNA:   3'- cUGu-GCCAcCG-CCGGUCGCa-ACCGCG- -5'
26831 5' -60.5 NC_005809.1 + 30674 0.66 0.379748
Target:  5'- cGCugGGUguaGGCGGCgggaauuguCGGUGUugUGGCGg -3'
miRNA:   3'- cUGugCCA---CCGCCG---------GUCGCA--ACCGCg -5'
26831 5' -60.5 NC_005809.1 + 29394 0.7 0.204183
Target:  5'- cGGCGCGGUa--GGCCAGCagaaucuugGGCGCg -3'
miRNA:   3'- -CUGUGCCAccgCCGGUCGcaa------CCGCG- -5'
26831 5' -60.5 NC_005809.1 + 29029 0.66 0.371073
Target:  5'- gGGCAcCGaGUcaGGCGGCCGacaGUUcGGCGCg -3'
miRNA:   3'- -CUGU-GC-CA--CCGCCGGUcg-CAA-CCGCG- -5'
26831 5' -60.5 NC_005809.1 + 28758 0.66 0.362534
Target:  5'- aGCGCGGUgcgcuucucGGCGcGCaCGGCGUc-GCGCu -3'
miRNA:   3'- cUGUGCCA---------CCGC-CG-GUCGCAacCGCG- -5'
26831 5' -60.5 NC_005809.1 + 28662 0.68 0.284797
Target:  5'- aGAU-CGGUgccGGCGGCCucgccAGCGc-GGCGCg -3'
miRNA:   3'- -CUGuGCCA---CCGCCGG-----UCGCaaCCGCG- -5'
26831 5' -60.5 NC_005809.1 + 27836 0.67 0.306648
Target:  5'- -cCGCGGUGGC-GCCGGCc---GCGCc -3'
miRNA:   3'- cuGUGCCACCGcCGGUCGcaacCGCG- -5'
26831 5' -60.5 NC_005809.1 + 27633 0.66 0.374527
Target:  5'- gGGC-CGGUGGuUGGUCGGCaugaaagcuacccagGUgGGCGCc -3'
miRNA:   3'- -CUGuGCCACC-GCCGGUCG---------------CAaCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.