Results 41 - 60 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26831 | 5' | -60.5 | NC_005809.1 | + | 10351 | 0.68 | 0.284797 |
Target: 5'- --uGCGGUGGUGGUgAGUucGgacaGGCGCg -3' miRNA: 3'- cugUGCCACCGCCGgUCG--Caa--CCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 17898 | 0.68 | 0.277791 |
Target: 5'- gGGCGUGGacGUGGCCcGCGgcgGGCGCg -3' miRNA: 3'- -CUGUGCCacCGCCGGuCGCaa-CCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 32039 | 0.68 | 0.270924 |
Target: 5'- uGCGC-GUGGCGGCggaaAGCGUggccGGCGg -3' miRNA: 3'- cUGUGcCACCGCCGg---UCGCAa---CCGCg -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 1462 | 0.68 | 0.2576 |
Target: 5'- cGGCGCGGUcGGCGGCCuccuggcaGGCcgggguaucgcaGUgcuggucggacaUGGCGCc -3' miRNA: 3'- -CUGUGCCA-CCGCCGG--------UCG------------CA------------ACCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 15117 | 0.68 | 0.256948 |
Target: 5'- cGGCGCGcUGGCauaccagcgccagGGCCuGCGgccgccgGGCGCg -3' miRNA: 3'- -CUGUGCcACCG-------------CCGGuCGCaa-----CCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 8118 | 0.69 | 0.251141 |
Target: 5'- uGCACcgc-GCGGCCGGCGUUGGUuguggGCg -3' miRNA: 3'- cUGUGccacCGCCGGUCGCAACCG-----CG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 7422 | 0.69 | 0.251141 |
Target: 5'- gGGCAcCGGaUGGcCGGCCAGCaGUUcGGCu- -3' miRNA: 3'- -CUGU-GCC-ACC-GCCGGUCG-CAA-CCGcg -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 17034 | 0.69 | 0.244816 |
Target: 5'- cGGCuACGGgGGCGcuGCCGGCGgcGGCa- -3' miRNA: 3'- -CUG-UGCCaCCGC--CGGUCGCaaCCGcg -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 25050 | 0.69 | 0.244816 |
Target: 5'- aACGCGGUGGCGcGCuauauCAGC-UUGGUGa -3' miRNA: 3'- cUGUGCCACCGC-CG-----GUCGcAACCGCg -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 33930 | 0.69 | 0.231965 |
Target: 5'- cGAUACGGc-GCGGCCuggGGCGUUuccgaagGGCGUa -3' miRNA: 3'- -CUGUGCCacCGCCGG---UCGCAA-------CCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 21724 | 0.69 | 0.226634 |
Target: 5'- aACGCGGUacGGauGCCAcCGUUgGGCGCg -3' miRNA: 3'- cUGUGCCA--CCgcCGGUcGCAA-CCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 15539 | 0.69 | 0.220832 |
Target: 5'- uGCACGGUGcCGGCCuccaCGUccaggucaaUGGCGCc -3' miRNA: 3'- cUGUGCCACcGCCGGuc--GCA---------ACCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 12740 | 0.7 | 0.215158 |
Target: 5'- uGCugGGUGccGCGcCCAGaCGcUUGGCGCg -3' miRNA: 3'- cUGugCCAC--CGCcGGUC-GC-AACCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 38980 | 0.7 | 0.214597 |
Target: 5'- uACACGGccaacacUGGCGGCC-GCGgaucGGUGUa -3' miRNA: 3'- cUGUGCC-------ACCGCCGGuCGCaa--CCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 5085 | 0.7 | 0.214597 |
Target: 5'- --uGCGGUuggaacaGGCGGCCggcccAGCGUccggugcggcUGGCGCc -3' miRNA: 3'- cugUGCCA-------CCGCCGG-----UCGCA----------ACCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 16581 | 0.7 | 0.209609 |
Target: 5'- cGACGCGccGGacgaGGCCgaccacgcgauGGUGUUGGCGCc -3' miRNA: 3'- -CUGUGCcaCCg---CCGG-----------UCGCAACCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 7482 | 0.7 | 0.209609 |
Target: 5'- aGugGCGGUGGUauaGGCCccuugcaacuGGCGgcGcGCGCu -3' miRNA: 3'- -CugUGCCACCG---CCGG----------UCGCaaC-CGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 29394 | 0.7 | 0.204183 |
Target: 5'- cGGCGCGGUa--GGCCAGCagaaucuugGGCGCg -3' miRNA: 3'- -CUGUGCCAccgCCGGUCGcaa------CCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 8557 | 0.71 | 0.183686 |
Target: 5'- cGCGCcGaUGGCGGgCAGCGacaGGCGCg -3' miRNA: 3'- cUGUGcC-ACCGCCgGUCGCaa-CCGCG- -5' |
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26831 | 5' | -60.5 | NC_005809.1 | + | 22231 | 0.71 | 0.183686 |
Target: 5'- uGACGCGGcccUGGUugucGGCC-GCGaUGGCGUa -3' miRNA: 3'- -CUGUGCC---ACCG----CCGGuCGCaACCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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