Results 21 - 40 of 65 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 7276 | 0.67 | 0.376892 |
Target: 5'- ----uGCUGCuuGGCCUCGGGGCCGuAGUg -3' miRNA: 3'- gcucgUGAUG--CCGGGGCUCCGGU-UCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 13027 | 0.67 | 0.371672 |
Target: 5'- cCGAGCACggcguggguguccucUGCGGCCagGGGGCacAGCc -3' miRNA: 3'- -GCUCGUG---------------AUGCCGGggCUCCGguUCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 12580 | 0.67 | 0.36822 |
Target: 5'- gGAGCACgAUGGCCCguuCGAcGGCugcaucCAGGCc -3' miRNA: 3'- gCUCGUGaUGCCGGG---GCU-CCG------GUUCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 21316 | 0.67 | 0.359685 |
Target: 5'- uCGAGCACUuCGGgCuuGAugccGGCCAccGCg -3' miRNA: 3'- -GCUCGUGAuGCCgGggCU----CCGGUu-CG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 22424 | 0.67 | 0.359685 |
Target: 5'- cCGAGCAaUACgaauuccaGGcCCCCGAaGGCguGGCa -3' miRNA: 3'- -GCUCGUgAUG--------CC-GGGGCU-CCGguUCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 37269 | 0.67 | 0.358839 |
Target: 5'- -cGGC-CUACGGCCUCGAccuGCCAgacaugcAGCa -3' miRNA: 3'- gcUCGuGAUGCCGGGGCUc--CGGU-------UCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 1462 | 0.67 | 0.35129 |
Target: 5'- -cGGCGCggucgGCGGCCUCcuggcAGGCCGGGg -3' miRNA: 3'- gcUCGUGa----UGCCGGGGc----UCCGGUUCg -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 26846 | 0.68 | 0.343035 |
Target: 5'- uCGAGCGC-AUGGCCUCGc-GCCAguucgaugcccaGGCg -3' miRNA: 3'- -GCUCGUGaUGCCGGGGCucCGGU------------UCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 34166 | 0.68 | 0.343035 |
Target: 5'- -aAGCGC-ACGGCCCUGGccgacuGGCUAcGCa -3' miRNA: 3'- gcUCGUGaUGCCGGGGCU------CCGGUuCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 7386 | 0.68 | 0.342217 |
Target: 5'- gCGGGCACcGCGGCgaccuuccaccagCuuGAaGCCGGGCa -3' miRNA: 3'- -GCUCGUGaUGCCG-------------GggCUcCGGUUCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 31238 | 0.68 | 0.33492 |
Target: 5'- -cGGCGC-GCGGCCCagcuaCGAG-CCGGGCg -3' miRNA: 3'- gcUCGUGaUGCCGGG-----GCUCcGGUUCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 24013 | 0.68 | 0.334116 |
Target: 5'- gCGAGC---GCGGCCuccaCCGAcgugaucgacuucGGCCAGGCc -3' miRNA: 3'- -GCUCGugaUGCCGG----GGCU-------------CCGGUUCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 32846 | 0.68 | 0.333314 |
Target: 5'- aCGAGCAgUucgcccGCGGCUUCGAGGCguaucucuucgaGGGCa -3' miRNA: 3'- -GCUCGUgA------UGCCGGGGCUCCGg-----------UUCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 29076 | 0.68 | 0.326947 |
Target: 5'- gCGGGuCAUccuCGGgCgCCGAGGUCAGGCc -3' miRNA: 3'- -GCUC-GUGau-GCCgG-GGCUCCGGUUCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 42188 | 0.68 | 0.326947 |
Target: 5'- --cGCGCgcUGGCCgCGcucaaucggcAGGCCAAGCa -3' miRNA: 3'- gcuCGUGauGCCGGgGC----------UCCGGUUCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 12810 | 0.68 | 0.319115 |
Target: 5'- uCGcGCACgcgccUGGCagcagCCGAGGCCGAGUu -3' miRNA: 3'- -GCuCGUGau---GCCGg----GGCUCCGGUUCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 38793 | 0.68 | 0.319115 |
Target: 5'- -aGGCGCUGgcuuuCGGCacgaCCGAGGCUAcguccAGCg -3' miRNA: 3'- gcUCGUGAU-----GCCGg---GGCUCCGGU-----UCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 1314 | 0.68 | 0.319115 |
Target: 5'- aGGGCG--ACGGCCaCC-AGGCCGacaAGCg -3' miRNA: 3'- gCUCGUgaUGCCGG-GGcUCCGGU---UCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 41572 | 0.68 | 0.311425 |
Target: 5'- uCGA-CGCUGCGGUgaaCCaCGGcaccGGCCAGGCg -3' miRNA: 3'- -GCUcGUGAUGCCG---GG-GCU----CCGGUUCG- -5' |
|||||||
26835 | 5' | -59.3 | NC_005809.1 | + | 29824 | 0.69 | 0.282785 |
Target: 5'- gGAGCGCgccaagcgucugggcGCGGCaCCCagcaccaacGGGCCGGGCg -3' miRNA: 3'- gCUCGUGa--------------UGCCG-GGGc--------UCCGGUUCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home