miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26836 5' -57.7 NC_005809.1 + 27824 0.66 0.455786
Target:  5'- ---cGCGCGcGCUGCccGCGGUggCGCCg -3'
miRNA:   3'- acuuCGCGUuCGACGacUGCCG--GCGG- -5'
26836 5' -57.7 NC_005809.1 + 1313 0.67 0.449791
Target:  5'- cGAucuuGCGUcugauGGCuuuuucugucagcccUGUuaUGACGGCCGCCa -3'
miRNA:   3'- aCUu---CGCGu----UCG---------------ACG--ACUGCCGGCGG- -5'
26836 5' -57.7 NC_005809.1 + 16593 0.67 0.444829
Target:  5'- cGAGGCcgaccacGCGAuGgUGUUGGC-GCCGCCg -3'
miRNA:   3'- aCUUCG-------CGUU-CgACGACUGcCGGCGG- -5'
26836 5' -57.7 NC_005809.1 + 27717 0.67 0.435974
Target:  5'- -aAGGCGCccAGCgUGCggcGCuGGCCGCCa -3'
miRNA:   3'- acUUCGCGu-UCG-ACGac-UG-CCGGCGG- -5'
26836 5' -57.7 NC_005809.1 + 32347 0.67 0.426257
Target:  5'- cGccGCcCAGGUcGCUG-CGGUCGCCg -3'
miRNA:   3'- aCuuCGcGUUCGaCGACuGCCGGCGG- -5'
26836 5' -57.7 NC_005809.1 + 38315 0.67 0.416669
Target:  5'- ----aUGCcGGC-GCUGACGGCCGgCa -3'
miRNA:   3'- acuucGCGuUCGaCGACUGCCGGCgG- -5'
26836 5' -57.7 NC_005809.1 + 7414 0.67 0.416669
Target:  5'- uUGAAGC-CGGGCaccgGAUGGCCgGCCa -3'
miRNA:   3'- -ACUUCGcGUUCGacgaCUGCCGG-CGG- -5'
26836 5' -57.7 NC_005809.1 + 32681 0.67 0.416669
Target:  5'- gUGAAGCcCGAGCaguucGCcGACGuGCuCGCCg -3'
miRNA:   3'- -ACUUCGcGUUCGa----CGaCUGC-CG-GCGG- -5'
26836 5' -57.7 NC_005809.1 + 25250 0.67 0.416669
Target:  5'- cGAAGCGCAccuGUUGCUcGC-GCUGCUc -3'
miRNA:   3'- aCUUCGCGUu--CGACGAcUGcCGGCGG- -5'
26836 5' -57.7 NC_005809.1 + 18570 0.67 0.407214
Target:  5'- gGAGGC-CGcGCUcGCggUGACGGCCugGCCg -3'
miRNA:   3'- aCUUCGcGUuCGA-CG--ACUGCCGG--CGG- -5'
26836 5' -57.7 NC_005809.1 + 14769 0.67 0.407214
Target:  5'- ---cGCGCGAGgacgUGCUG-CGGCUGCg -3'
miRNA:   3'- acuuCGCGUUCg---ACGACuGCCGGCGg -5'
26836 5' -57.7 NC_005809.1 + 24288 0.67 0.407214
Target:  5'- cGucGC-CAccGGCccGCUGACGGCCGgCa -3'
miRNA:   3'- aCuuCGcGU--UCGa-CGACUGCCGGCgG- -5'
26836 5' -57.7 NC_005809.1 + 11576 0.67 0.397895
Target:  5'- cGAAGC-CAugccgcccagGGCcGCcGGCuGGCCGCCg -3'
miRNA:   3'- aCUUCGcGU----------UCGaCGaCUG-CCGGCGG- -5'
26836 5' -57.7 NC_005809.1 + 9321 0.67 0.397895
Target:  5'- gGcGGCGCAcgucGGCgcgGCgGGCGGCgGCa -3'
miRNA:   3'- aCuUCGCGU----UCGa--CGaCUGCCGgCGg -5'
26836 5' -57.7 NC_005809.1 + 27416 0.67 0.397895
Target:  5'- cGucGCGCGccuGGCgcaccGCgcccGGCGGCCGCa -3'
miRNA:   3'- aCuuCGCGU---UCGa----CGa---CUGCCGGCGg -5'
26836 5' -57.7 NC_005809.1 + 35142 0.67 0.396971
Target:  5'- cGAAGC-CGAaCUGCUGGcCGGCCauccgguGCCc -3'
miRNA:   3'- aCUUCGcGUUcGACGACU-GCCGG-------CGG- -5'
26836 5' -57.7 NC_005809.1 + 20297 0.68 0.388714
Target:  5'- --cAGUaGCGGGUUGCUcGGCGGCCGg- -3'
miRNA:   3'- acuUCG-CGUUCGACGA-CUGCCGGCgg -5'
26836 5' -57.7 NC_005809.1 + 20256 0.68 0.388714
Target:  5'- cUGGgucGGCuGUu-GCUGCUGuuGGCCGUCg -3'
miRNA:   3'- -ACU---UCG-CGuuCGACGACugCCGGCGG- -5'
26836 5' -57.7 NC_005809.1 + 6369 0.68 0.388714
Target:  5'- cGggGCGCuGGGUUaCaccagGuCGGCCGCCg -3'
miRNA:   3'- aCuuCGCG-UUCGAcGa----CuGCCGGCGG- -5'
26836 5' -57.7 NC_005809.1 + 29434 0.68 0.379672
Target:  5'- cGAGGCGC-AGUUGCaGAacgacccacgccUGGCCGgCa -3'
miRNA:   3'- aCUUCGCGuUCGACGaCU------------GCCGGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.