Results 1 - 20 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26837 | 3' | -56.4 | NC_005809.1 | + | 804 | 0.66 | 0.553411 |
Target: 5'- -cCGGCGAcGCg--CCGCGCCC--AGCc -3' miRNA: 3'- aaGCCGCU-UGacaGGUGCGGGcuUCG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 1355 | 0.67 | 0.499701 |
Target: 5'- gUCGGCGGccuuGCgcaUCCgGCGaCCGAAGCg -3' miRNA: 3'- aAGCCGCU----UGac-AGG-UGCgGGCUUCG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 3080 | 0.68 | 0.438522 |
Target: 5'- cUUCGGCGAugagcacuuguGCUGUCU-CGaCCUGAuGCg -3' miRNA: 3'- -AAGCCGCU-----------UGACAGGuGC-GGGCUuCG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 3852 | 0.7 | 0.364082 |
Target: 5'- cUCGGCGAAgUUGUaCCAgGCgCCGucGCu -3' miRNA: 3'- aAGCCGCUU-GACA-GGUgCG-GGCuuCG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 4626 | 0.68 | 0.419095 |
Target: 5'- gUCGGCGGggauGCUGggCCACGCUgCGucGGCc -3' miRNA: 3'- aAGCCGCU----UGACa-GGUGCGG-GCu-UCG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 5154 | 0.68 | 0.448426 |
Target: 5'- --aGGCGGccgucGCUGcUCACGCCCuuGGCg -3' miRNA: 3'- aagCCGCU-----UGACaGGUGCGGGcuUCG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 5609 | 0.66 | 0.553411 |
Target: 5'- cUCGGCGGGgUGcguUUCGCGCgUGgcGCg -3' miRNA: 3'- aAGCCGCUUgAC---AGGUGCGgGCuuCG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 6646 | 0.67 | 0.499701 |
Target: 5'- cUUGGcCGGAgUGUCCGCGCUCauGGUc -3' miRNA: 3'- aAGCC-GCUUgACAGGUGCGGGcuUCG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 6986 | 0.69 | 0.409579 |
Target: 5'- aUUC-GCGGAagcgcGUCCGCGCCCGAuucGCc -3' miRNA: 3'- -AAGcCGCUUga---CAGGUGCGGGCUu--CG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 7254 | 0.69 | 0.390958 |
Target: 5'- gUCGGCcgcccaggucuuGAACUGcugCUugGCCuCGggGCc -3' miRNA: 3'- aAGCCG------------CUUGACa--GGugCGG-GCuuCG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 7395 | 0.66 | 0.553411 |
Target: 5'- -gCGGCGAcCU-UCCACcaGCuuGAAGCc -3' miRNA: 3'- aaGCCGCUuGAcAGGUG--CGggCUUCG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 8156 | 0.7 | 0.346889 |
Target: 5'- gUCGGCGcuGC-GUCCcugcgcguGCGCCCGGAuGCu -3' miRNA: 3'- aAGCCGCu-UGaCAGG--------UGCGGGCUU-CG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 8529 | 0.68 | 0.462498 |
Target: 5'- -cCGGCGAACUugcccagguaucgcaGgCCGCGCUCGAccucauccugGGCg -3' miRNA: 3'- aaGCCGCUUGA---------------CaGGUGCGGGCU----------UCG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 9719 | 0.67 | 0.489228 |
Target: 5'- cUCGGCGccGACcGUCUGCGgCCaggCGAAGCc -3' miRNA: 3'- aAGCCGC--UUGaCAGGUGC-GG---GCUUCG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 9894 | 0.72 | 0.25547 |
Target: 5'- gUCGGCGAACUGcucgggcUUCACGUCgGGcAGCu -3' miRNA: 3'- aAGCCGCUUGAC-------AGGUGCGGgCU-UCG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 11334 | 0.69 | 0.381856 |
Target: 5'- -cCGGCucguAGCUGggCCGCGCgCCGggGUu -3' miRNA: 3'- aaGCCGc---UUGACa-GGUGCG-GGCuuCG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 13352 | 0.73 | 0.224472 |
Target: 5'- cUUCGGCGGACUGgacgCCaugcgcGCGUCCGAccuGCc -3' miRNA: 3'- -AAGCCGCUUGACa---GG------UGCGGGCUu--CG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 13647 | 0.67 | 0.531683 |
Target: 5'- -cCGGCGcGGCcGUCCAUGUCCuuGGUg -3' miRNA: 3'- aaGCCGC-UUGaCAGGUGCGGGcuUCG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 14436 | 0.67 | 0.510271 |
Target: 5'- -cCGGCaAGCUG-CUGcCGCCCGAccaGGCg -3' miRNA: 3'- aaGCCGcUUGACaGGU-GCGGGCU---UCG- -5' |
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26837 | 3' | -56.4 | NC_005809.1 | + | 14817 | 0.66 | 0.575396 |
Target: 5'- cUCGGCGGcGCUG-CCuuCGCCC-AGGUc -3' miRNA: 3'- aAGCCGCU-UGACaGGu-GCGGGcUUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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