miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26837 3' -56.4 NC_005809.1 + 1355 0.67 0.499701
Target:  5'- gUCGGCGGccuuGCgcaUCCgGCGaCCGAAGCg -3'
miRNA:   3'- aAGCCGCU----UGac-AGG-UGCgGGCUUCG- -5'
26837 3' -56.4 NC_005809.1 + 26826 0.67 0.499701
Target:  5'- uUUUGGCaGGCUGcgCCGC-CCCGAuggAGCg -3'
miRNA:   3'- -AAGCCGcUUGACa-GGUGcGGGCU---UCG- -5'
26837 3' -56.4 NC_005809.1 + 6646 0.67 0.499701
Target:  5'- cUUGGcCGGAgUGUCCGCGCUCauGGUc -3'
miRNA:   3'- aAGCC-GCUUgACAGGUGCGGGcuUCG- -5'
26837 3' -56.4 NC_005809.1 + 9719 0.67 0.489228
Target:  5'- cUCGGCGccGACcGUCUGCGgCCaggCGAAGCc -3'
miRNA:   3'- aAGCCGC--UUGaCAGGUGC-GG---GCUUCG- -5'
26837 3' -56.4 NC_005809.1 + 41742 0.67 0.47886
Target:  5'- gUCGGCucGCUGUCUcuGCGCgCGcucAAGCc -3'
miRNA:   3'- aAGCCGcuUGACAGG--UGCGgGC---UUCG- -5'
26837 3' -56.4 NC_005809.1 + 8529 0.68 0.462498
Target:  5'- -cCGGCGAACUugcccagguaucgcaGgCCGCGCUCGAccucauccugGGCg -3'
miRNA:   3'- aaGCCGCUUGA---------------CaGGUGCGGGCU----------UCG- -5'
26837 3' -56.4 NC_005809.1 + 31026 0.68 0.457446
Target:  5'- -cCGGCGGGCaGUCCuaucaggAUGCCCGcucGCa -3'
miRNA:   3'- aaGCCGCUUGaCAGG-------UGCGGGCuu-CG- -5'
26837 3' -56.4 NC_005809.1 + 17915 0.68 0.454428
Target:  5'- -gCGGCGGGCgcgacaacaccaUCCugGCCCGccGGCa -3'
miRNA:   3'- aaGCCGCUUGac----------AGGugCGGGCu-UCG- -5'
26837 3' -56.4 NC_005809.1 + 39818 0.68 0.448427
Target:  5'- gUCGGCagug-GUCggCACGCCCGAgcAGCg -3'
miRNA:   3'- aAGCCGcuugaCAG--GUGCGGGCU--UCG- -5'
26837 3' -56.4 NC_005809.1 + 5154 0.68 0.448426
Target:  5'- --aGGCGGccgucGCUGcUCACGCCCuuGGCg -3'
miRNA:   3'- aagCCGCU-----UGACaGGUGCGGGcuUCG- -5'
26837 3' -56.4 NC_005809.1 + 27977 0.68 0.438522
Target:  5'- cUCGGUGGGCUGggCCAUcaggcuguaGCCgaUGAGGCg -3'
miRNA:   3'- aAGCCGCUUGACa-GGUG---------CGG--GCUUCG- -5'
26837 3' -56.4 NC_005809.1 + 3080 0.68 0.438522
Target:  5'- cUUCGGCGAugagcacuuguGCUGUCU-CGaCCUGAuGCg -3'
miRNA:   3'- -AAGCCGCU-----------UGACAGGuGC-GGGCUuCG- -5'
26837 3' -56.4 NC_005809.1 + 30641 0.68 0.428743
Target:  5'- gUCGGU--ACUGUCCA-GCCUGGgcacGGCg -3'
miRNA:   3'- aAGCCGcuUGACAGGUgCGGGCU----UCG- -5'
26837 3' -56.4 NC_005809.1 + 32636 0.68 0.428743
Target:  5'- -gCGGUc-GCUGUCCugucgaaguucgGCGCCgCGAAGCu -3'
miRNA:   3'- aaGCCGcuUGACAGG------------UGCGG-GCUUCG- -5'
26837 3' -56.4 NC_005809.1 + 4626 0.68 0.419095
Target:  5'- gUCGGCGGggauGCUGggCCACGCUgCGucGGCc -3'
miRNA:   3'- aAGCCGCU----UGACa-GGUGCGG-GCu-UCG- -5'
26837 3' -56.4 NC_005809.1 + 6986 0.69 0.409579
Target:  5'- aUUC-GCGGAagcgcGUCCGCGCCCGAuucGCc -3'
miRNA:   3'- -AAGcCGCUUga---CAGGUGCGGGCUu--CG- -5'
26837 3' -56.4 NC_005809.1 + 29096 0.69 0.400199
Target:  5'- gUCGGCaucGCccagGUcaugcccgacaCCGCGCCCGAGGCc -3'
miRNA:   3'- aAGCCGcu-UGa---CA-----------GGUGCGGGCUUCG- -5'
26837 3' -56.4 NC_005809.1 + 7254 0.69 0.390958
Target:  5'- gUCGGCcgcccaggucuuGAACUGcugCUugGCCuCGggGCc -3'
miRNA:   3'- aAGCCG------------CUUGACa--GGugCGG-GCuuCG- -5'
26837 3' -56.4 NC_005809.1 + 32868 0.69 0.381856
Target:  5'- gUCGGCGccgaGAUUGU-CGCGCCCGAc-- -3'
miRNA:   3'- aAGCCGC----UUGACAgGUGCGGGCUucg -5'
26837 3' -56.4 NC_005809.1 + 11334 0.69 0.381856
Target:  5'- -cCGGCucguAGCUGggCCGCGCgCCGggGUu -3'
miRNA:   3'- aaGCCGc---UUGACa-GGUGCG-GGCuuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.