miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26837 5' -54.3 NC_005809.1 + 1127 0.67 0.605186
Target:  5'- uUGCCGUCGAUcaugagcAGCGgCCGUUUGCGc- -3'
miRNA:   3'- cGCGGCGGCUA-------UCGC-GGUAAGUGUua -5'
26837 5' -54.3 NC_005809.1 + 1160 0.69 0.473973
Target:  5'- uCGCCGUCGAUGGUgaaggacaGCCGUaUCGCGc- -3'
miRNA:   3'- cGCGGCGGCUAUCG--------CGGUA-AGUGUua -5'
26837 5' -54.3 NC_005809.1 + 2111 0.73 0.299705
Target:  5'- cGUGUCGUCGGUAuagauuGCGCCGUUgGCGAg -3'
miRNA:   3'- -CGCGGCGGCUAU------CGCGGUAAgUGUUa -5'
26837 5' -54.3 NC_005809.1 + 2153 0.66 0.686011
Target:  5'- cGCGCCGCCGuacacguUGGCGaacagUUGCGAg -3'
miRNA:   3'- -CGCGGCGGCu------AUCGCggua-AGUGUUa -5'
26837 5' -54.3 NC_005809.1 + 2993 0.71 0.366588
Target:  5'- aGUGCCGCCGaAUAGCGCa----GCAGc -3'
miRNA:   3'- -CGCGGCGGC-UAUCGCGguaagUGUUa -5'
26837 5' -54.3 NC_005809.1 + 3551 0.67 0.594951
Target:  5'- -aGCCGCCGaAUAGCGCagca-GCGGg -3'
miRNA:   3'- cgCGGCGGC-UAUCGCGguaagUGUUa -5'
26837 5' -54.3 NC_005809.1 + 3566 0.66 0.64055
Target:  5'- cGCGCCGCauaaauuucagCGAc-GCGCCGggUCACGu- -3'
miRNA:   3'- -CGCGGCG-----------GCUauCGCGGUa-AGUGUua -5'
26837 5' -54.3 NC_005809.1 + 3609 0.67 0.606325
Target:  5'- -gGCCGUguauuCGGauGCGCCAUUCACGc- -3'
miRNA:   3'- cgCGGCG-----GCUauCGCGGUAAGUGUua -5'
26837 5' -54.3 NC_005809.1 + 4016 0.66 0.651956
Target:  5'- cGCGCCgGCCaccAGCGUCAUgccgCGCGGg -3'
miRNA:   3'- -CGCGG-CGGcuaUCGCGGUAa---GUGUUa -5'
26837 5' -54.3 NC_005809.1 + 4577 0.69 0.50593
Target:  5'- gGCGCUGCuCGGU-GCGCCAg--GCGAg -3'
miRNA:   3'- -CGCGGCG-GCUAuCGCGGUaagUGUUa -5'
26837 5' -54.3 NC_005809.1 + 5028 0.68 0.561069
Target:  5'- aGCGCCGCgaugccccgcuCGAUGGCGuCCugcuugagCACAGg -3'
miRNA:   3'- -CGCGGCG-----------GCUAUCGC-GGuaa-----GUGUUa -5'
26837 5' -54.3 NC_005809.1 + 6674 0.69 0.49517
Target:  5'- uGCGCCacGCCGAUguucAGgGCCGUguUCAUGAa -3'
miRNA:   3'- -CGCGG--CGGCUA----UCgCGGUA--AGUGUUa -5'
26837 5' -54.3 NC_005809.1 + 7298 0.7 0.423097
Target:  5'- aGUGCuCGCgGAUGGCGCCGUcgauggUCuGCGAa -3'
miRNA:   3'- -CGCG-GCGgCUAUCGCGGUA------AG-UGUUa -5'
26837 5' -54.3 NC_005809.1 + 8620 0.66 0.663343
Target:  5'- gGCGUgGCCGGUA-CGCCcUUCGgAAa -3'
miRNA:   3'- -CGCGgCGGCUAUcGCGGuAAGUgUUa -5'
26837 5' -54.3 NC_005809.1 + 8686 0.73 0.277173
Target:  5'- uGCGCCGCCcaGGUGuGCGCCg--CGCAGa -3'
miRNA:   3'- -CGCGGCGG--CUAU-CGCGGuaaGUGUUa -5'
26837 5' -54.3 NC_005809.1 + 10408 0.67 0.606325
Target:  5'- aGCG-CGCCGAUGGCcucGCCAcuuUUCAUu-- -3'
miRNA:   3'- -CGCgGCGGCUAUCG---CGGU---AAGUGuua -5'
26837 5' -54.3 NC_005809.1 + 11592 0.7 0.413319
Target:  5'- aGgGCCGCCGGcUGGCcGCCGggcaGCAGUg -3'
miRNA:   3'- -CgCGGCGGCU-AUCG-CGGUaag-UGUUA- -5'
26837 5' -54.3 NC_005809.1 + 12435 0.69 0.50593
Target:  5'- gGCGCUGUCGAUGuCGCCGaccUUCAUg-- -3'
miRNA:   3'- -CGCGGCGGCUAUcGCGGU---AAGUGuua -5'
26837 5' -54.3 NC_005809.1 + 14033 0.66 0.686011
Target:  5'- gGCgGCCGCaaGGUcGUGCCGUUCaACAAg -3'
miRNA:   3'- -CG-CGGCGg-CUAuCGCGGUAAG-UGUUa -5'
26837 5' -54.3 NC_005809.1 + 14993 0.66 0.64055
Target:  5'- gGCGCCGCCugcugccGGUGCCcUUUACGc- -3'
miRNA:   3'- -CGCGGCGGcua----UCGCGGuAAGUGUua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.