Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26837 | 5' | -54.3 | NC_005809.1 | + | 34357 | 0.67 | 0.629135 |
Target: 5'- -gGCCGCCGAccAGCgcgacuacgagGCCGUgCGCGAUg -3' miRNA: 3'- cgCGGCGGCUa-UCG-----------CGGUAaGUGUUA- -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 25753 | 0.67 | 0.617723 |
Target: 5'- uGCGCCGCgUGAacuGCGCCGccugggCGCGAc -3' miRNA: 3'- -CGCGGCG-GCUau-CGCGGUaa----GUGUUa -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 16968 | 0.67 | 0.606325 |
Target: 5'- cGCGCCGCCG-UGGuUGCCAcugccugggcCGCAGa -3' miRNA: 3'- -CGCGGCGGCuAUC-GCGGUaa--------GUGUUa -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 3609 | 0.67 | 0.606325 |
Target: 5'- -gGCCGUguauuCGGauGCGCCAUUCACGc- -3' miRNA: 3'- cgCGGCG-----GCUauCGCGGUAAGUGUua -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 10408 | 0.67 | 0.606325 |
Target: 5'- aGCG-CGCCGAUGGCcucGCCAcuuUUCAUu-- -3' miRNA: 3'- -CGCgGCGGCUAUCG---CGGU---AAGUGuua -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 31534 | 0.67 | 0.606325 |
Target: 5'- uGUGuuGCCGuggaaacAGCGCCucgGUUCGCGGg -3' miRNA: 3'- -CGCggCGGCua-----UCGCGG---UAAGUGUUa -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 1127 | 0.67 | 0.605186 |
Target: 5'- uUGCCGUCGAUcaugagcAGCGgCCGUUUGCGc- -3' miRNA: 3'- cGCGGCGGCUA-------UCGC-GGUAAGUGUua -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 3551 | 0.67 | 0.594951 |
Target: 5'- -aGCCGCCGaAUAGCGCagca-GCGGg -3' miRNA: 3'- cgCGGCGGC-UAUCGCGguaagUGUUa -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 33348 | 0.67 | 0.583611 |
Target: 5'- cUGCCGCCGGgcGCGCCg--CAgAAc -3' miRNA: 3'- cGCGGCGGCUauCGCGGuaaGUgUUa -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 37784 | 0.67 | 0.572313 |
Target: 5'- aGCGCCaGCCGGc-GUGCUGggCGCAGUg -3' miRNA: 3'- -CGCGG-CGGCUauCGCGGUaaGUGUUA- -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 15588 | 0.67 | 0.572313 |
Target: 5'- cGCGCUGCgGAUGcaccGCGCCAUcggcCAgGAUg -3' miRNA: 3'- -CGCGGCGgCUAU----CGCGGUAa---GUgUUA- -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 22036 | 0.68 | 0.561069 |
Target: 5'- gGCGCCGCaucguGUGGCGCU-UUCugGAa -3' miRNA: 3'- -CGCGGCGgc---UAUCGCGGuAAGugUUa -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 5028 | 0.68 | 0.561069 |
Target: 5'- aGCGCCGCgaugccccgcuCGAUGGCGuCCugcuugagCACAGg -3' miRNA: 3'- -CGCGGCG-----------GCUAUCGC-GGuaa-----GUGUUa -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 15845 | 0.68 | 0.549886 |
Target: 5'- cGCGCUGgCGGUGGC-CCGgcUUUGCAAUa -3' miRNA: 3'- -CGCGGCgGCUAUCGcGGU--AAGUGUUA- -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 25537 | 0.68 | 0.549886 |
Target: 5'- cCGCCGCCGGcAGCGCCcccguagC-CGAUg -3' miRNA: 3'- cGCGGCGGCUaUCGCGGuaa----GuGUUA- -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 35493 | 0.68 | 0.549886 |
Target: 5'- cGCGCCGUgGGUAG-GCCGcggcgUCAUGAa -3' miRNA: 3'- -CGCGGCGgCUAUCgCGGUa----AGUGUUa -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 24116 | 0.68 | 0.549886 |
Target: 5'- aCGCCGCCG---GCGCCGcgaccgUCACGu- -3' miRNA: 3'- cGCGGCGGCuauCGCGGUa-----AGUGUua -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 25814 | 0.68 | 0.549886 |
Target: 5'- aCGUCGCCGGUGGCuaCGccCACGAg -3' miRNA: 3'- cGCGGCGGCUAUCGcgGUaaGUGUUa -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 41431 | 0.68 | 0.538773 |
Target: 5'- cCGCCGCCG-UAGCGCgAgcuaACGGUu -3' miRNA: 3'- cGCGGCGGCuAUCGCGgUaag-UGUUA- -5' |
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26837 | 5' | -54.3 | NC_005809.1 | + | 24186 | 0.68 | 0.538773 |
Target: 5'- -gGCCGCCaccGGCGCCAUcgGCAAg -3' miRNA: 3'- cgCGGCGGcuaUCGCGGUAagUGUUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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