miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26838 3' -50.2 NC_005809.1 + 11273 0.67 0.82402
Target:  5'- uGCGGCGCUGggacgCucGGCCagGUAGGCg -3'
miRNA:   3'- -UGCUGCGAUaa---GuuCUGGa-CGUUCGg -5'
26838 3' -50.2 NC_005809.1 + 21387 0.67 0.82402
Target:  5'- aAUGGCGCg---CuGGGCCUGCGcgAGCa -3'
miRNA:   3'- -UGCUGCGauaaGuUCUGGACGU--UCGg -5'
26838 3' -50.2 NC_005809.1 + 25323 0.68 0.814203
Target:  5'- cCGGCGCUcgUCGccgGGAUUgucCAGGCCg -3'
miRNA:   3'- uGCUGCGAuaAGU---UCUGGac-GUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 22374 0.68 0.814203
Target:  5'- -gGGCGCUGc-CAAGACCgaggGCGacgacaaggcgaAGCCg -3'
miRNA:   3'- ugCUGCGAUaaGUUCUGGa---CGU------------UCGG- -5'
26838 3' -50.2 NC_005809.1 + 28425 0.68 0.804171
Target:  5'- aACG-CGCUGgaac-GGCCggaagGCAAGCCg -3'
miRNA:   3'- -UGCuGCGAUaaguuCUGGa----CGUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 18251 0.68 0.803156
Target:  5'- -gGAUGCcggUCAcGACCUGCGccgagaacuugccGGCCg -3'
miRNA:   3'- ugCUGCGauaAGUuCUGGACGU-------------UCGG- -5'
26838 3' -50.2 NC_005809.1 + 7545 0.68 0.793936
Target:  5'- gGCGGCGUg---CucGAUCUGCGGcGCCa -3'
miRNA:   3'- -UGCUGCGauaaGuuCUGGACGUU-CGG- -5'
26838 3' -50.2 NC_005809.1 + 37561 0.68 0.772909
Target:  5'- cGCGGCGCUGaaagCGGacugcgccGACCUGCuguucGCCa -3'
miRNA:   3'- -UGCUGCGAUaa--GUU--------CUGGACGuu---CGG- -5'
26838 3' -50.2 NC_005809.1 + 27018 0.69 0.751227
Target:  5'- gACGGCGCcAUUgAccuGGACgUGgAGGCCg -3'
miRNA:   3'- -UGCUGCGaUAAgU---UCUGgACgUUCGG- -5'
26838 3' -50.2 NC_005809.1 + 32592 0.69 0.729
Target:  5'- cCGACGCUGUgacCAAGcugGCCcGCGucaagGGCCg -3'
miRNA:   3'- uGCUGCGAUAa--GUUC---UGGaCGU-----UCGG- -5'
26838 3' -50.2 NC_005809.1 + 13228 0.69 0.729
Target:  5'- cCGGCGCgugGUUCGAGgacuugGCCgGCGAccGCCa -3'
miRNA:   3'- uGCUGCGa--UAAGUUC------UGGaCGUU--CGG- -5'
26838 3' -50.2 NC_005809.1 + 40904 0.69 0.727876
Target:  5'- cGCGaguccaaGCGCagGUgCAAGACCUGCuacuggAAGCCa -3'
miRNA:   3'- -UGC-------UGCGa-UAaGUUCUGGACG------UUCGG- -5'
26838 3' -50.2 NC_005809.1 + 9537 0.69 0.727876
Target:  5'- uGCGGCcCUGUUCGGccagugcGAUCUGCucGCCg -3'
miRNA:   3'- -UGCUGcGAUAAGUU-------CUGGACGuuCGG- -5'
26838 3' -50.2 NC_005809.1 + 26131 0.69 0.717716
Target:  5'- uACGACGCcgUGUUCAAcGCCgccgGCGauuaccccgcGGCCg -3'
miRNA:   3'- -UGCUGCG--AUAAGUUcUGGa---CGU----------UCGG- -5'
26838 3' -50.2 NC_005809.1 + 41965 0.69 0.717716
Target:  5'- cACGGCGCUGcuggccGACCcGCAGGCg -3'
miRNA:   3'- -UGCUGCGAUaaguu-CUGGaCGUUCGg -5'
26838 3' -50.2 NC_005809.1 + 35203 0.69 0.717716
Target:  5'- aACGACGUgAUUCAcGACCUGgCGuGGCa -3'
miRNA:   3'- -UGCUGCGaUAAGUuCUGGAC-GU-UCGg -5'
26838 3' -50.2 NC_005809.1 + 12682 0.69 0.717716
Target:  5'- -aGGCGCgugUCGAGGCCcGCcuugauAGCCu -3'
miRNA:   3'- ugCUGCGauaAGUUCUGGaCGu-----UCGG- -5'
26838 3' -50.2 NC_005809.1 + 28938 0.7 0.694876
Target:  5'- gACGGCGCg---CcGGACUUGCu-GCCg -3'
miRNA:   3'- -UGCUGCGauaaGuUCUGGACGuuCGG- -5'
26838 3' -50.2 NC_005809.1 + 31008 0.7 0.694876
Target:  5'- cGCGAC-CUGUcCAcGGGCUUGCcGGCCg -3'
miRNA:   3'- -UGCUGcGAUAaGU-UCUGGACGuUCGG- -5'
26838 3' -50.2 NC_005809.1 + 31859 0.7 0.683347
Target:  5'- gACGACGC-AUUCAagcaaucggccgAGGCCgUGCGcgcuGCCg -3'
miRNA:   3'- -UGCUGCGaUAAGU------------UCUGG-ACGUu---CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.