Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26838 | 5' | -52.6 | NC_005809.1 | + | 2233 | 0.67 | 0.70829 |
Target: 5'- cGCGcaGCAggcgGCGcGUGGCcGCGCAAUGa- -3' miRNA: 3'- -CGC--UGUa---CGU-CACCGaCGUGUUACgu -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 5635 | 0.7 | 0.513348 |
Target: 5'- cGCGGCGcagcuUGCuGGUGGCUGgACGcgguuUGCAg -3' miRNA: 3'- -CGCUGU-----ACG-UCACCGACgUGUu----ACGU- -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 7123 | 0.68 | 0.604342 |
Target: 5'- uGCGugAUGCccAGcGGUUGCAUAAggGCGc -3' miRNA: 3'- -CGCugUACG--UCaCCGACGUGUUa-CGU- -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 12565 | 0.71 | 0.44893 |
Target: 5'- cGCGGCcGUGCAGUuGgaGCACGAUGg- -3' miRNA: 3'- -CGCUG-UACGUCAcCgaCGUGUUACgu -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 14684 | 0.66 | 0.719595 |
Target: 5'- cGCGACGUGCuG-GGCgaGCACGccaagaugGCGa -3' miRNA: 3'- -CGCUGUACGuCaCCGa-CGUGUua------CGU- -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 14776 | 0.73 | 0.334978 |
Target: 5'- -gGACGUGCuGcGGCUGCGCGGcGCGc -3' miRNA: 3'- cgCUGUACGuCaCCGACGUGUUaCGU- -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 15102 | 0.67 | 0.685442 |
Target: 5'- cGCGugGUGC-GUGcGCgGCGCGcugGCAu -3' miRNA: 3'- -CGCugUACGuCAC-CGaCGUGUua-CGU- -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 16647 | 0.68 | 0.627551 |
Target: 5'- gGCGACAUGCuG-GGCcacCGCAAgcUGCAa -3' miRNA: 3'- -CGCUGUACGuCaCCGac-GUGUU--ACGU- -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 18195 | 0.72 | 0.408552 |
Target: 5'- aGCGAguUGUGGUGGCgaaUGCGCGAaGCc -3' miRNA: 3'- -CGCUguACGUCACCG---ACGUGUUaCGu -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 21189 | 0.68 | 0.615938 |
Target: 5'- cGCGGCcUGCuGcUGGuCUGCGCGuUGCu -3' miRNA: 3'- -CGCUGuACGuC-ACC-GACGUGUuACGu -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 25597 | 0.68 | 0.650777 |
Target: 5'- uGCGGCccagGCAGUGGCaaccacggcgGCGCGGUcGCc -3' miRNA: 3'- -CGCUGua--CGUCACCGa---------CGUGUUA-CGu -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 26139 | 0.68 | 0.650777 |
Target: 5'- cGCGGCAgauuuggcGCAGcGGCUcGCcgucuGCGAUGCGg -3' miRNA: 3'- -CGCUGUa-------CGUCaCCGA-CG-----UGUUACGU- -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 27135 | 0.66 | 0.719595 |
Target: 5'- cGCGucaagaacaucaACAaGCuGUGGUUGCGC-GUGCAu -3' miRNA: 3'- -CGC------------UGUaCGuCACCGACGUGuUACGU- -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 33186 | 1.11 | 0.000761 |
Target: 5'- cGCGACAUGCAGUGGCUGCACAAUGCAc -3' miRNA: 3'- -CGCUGUACGUCACCGACGUGUUACGU- -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 33904 | 0.68 | 0.639168 |
Target: 5'- gGCGGCGcaGCAGccGCUGCACAcaGCGa -3' miRNA: 3'- -CGCUGUa-CGUCacCGACGUGUuaCGU- -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 35881 | 0.66 | 0.763716 |
Target: 5'- -gGACAaGguGUGcCUGCACGAUGgCGa -3' miRNA: 3'- cgCUGUaCguCACcGACGUGUUAC-GU- -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 36106 | 0.77 | 0.184245 |
Target: 5'- cGCGGCGUGCAGUucCUGCGCGAcgGCGa -3' miRNA: 3'- -CGCUGUACGUCAccGACGUGUUa-CGU- -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 37399 | 0.73 | 0.370519 |
Target: 5'- aCGACGUGCAGgcGGUgGCagGCAAUGCGg -3' miRNA: 3'- cGCUGUACGUCa-CCGaCG--UGUUACGU- -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 38194 | 0.67 | 0.662368 |
Target: 5'- cGCGACG-GCGccUGGCUGCGCAuccGCc -3' miRNA: 3'- -CGCUGUaCGUc-ACCGACGUGUua-CGu -5' |
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26838 | 5' | -52.6 | NC_005809.1 | + | 38555 | 0.7 | 0.513348 |
Target: 5'- cGCGGCAUGacgcuGGUGGCcgGCGCGuuuuggGCGg -3' miRNA: 3'- -CGCUGUACg----UCACCGa-CGUGUua----CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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