miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26839 3' -56.9 NC_005809.1 + 19358 0.66 0.555348
Target:  5'- cGGCGGaAUUGC-CguugaGGUCGGcCAGGGCc -3'
miRNA:   3'- -UCGUC-UAGCGuGa----CCGGCUuGUCCCG- -5'
26839 3' -56.9 NC_005809.1 + 33364 0.66 0.555348
Target:  5'- cGCAGAaCGUGCgccgcgccGCCGAGCAGGcCa -3'
miRNA:   3'- uCGUCUaGCGUGac------CGGCUUGUCCcG- -5'
26839 3' -56.9 NC_005809.1 + 29412 0.66 0.555348
Target:  5'- cGCGGc-CGaCACUGGCCGAcauCGaGGCg -3'
miRNA:   3'- uCGUCuaGC-GUGACCGGCUu--GUcCCG- -5'
26839 3' -56.9 NC_005809.1 + 12099 0.66 0.55207
Target:  5'- cAGCAGGUgaCGCGaugaccggcgccccCUGGCaacuGAuuCAGGGCg -3'
miRNA:   3'- -UCGUCUA--GCGU--------------GACCGg---CUu-GUCCCG- -5'
26839 3' -56.9 NC_005809.1 + 15115 0.66 0.550978
Target:  5'- cGCGG--CGCGCUGGCauaccagcgcCAGGGCc -3'
miRNA:   3'- uCGUCuaGCGUGACCGgcuu------GUCCCG- -5'
26839 3' -56.9 NC_005809.1 + 19925 0.66 0.548797
Target:  5'- aAGCuGGAugUCGCACUGGaaggaaaucagCGAcuacugcugccgcgcGCGGGGCg -3'
miRNA:   3'- -UCG-UCU--AGCGUGACCg----------GCU---------------UGUCCCG- -5'
26839 3' -56.9 NC_005809.1 + 8218 0.66 0.544444
Target:  5'- cGUAG-UCGCGCUGGUCGGcggccgucaGCAGcuuGCg -3'
miRNA:   3'- uCGUCuAGCGUGACCGGCU---------UGUCc--CG- -5'
26839 3' -56.9 NC_005809.1 + 18114 0.66 0.543357
Target:  5'- cAGCAGGUCGUcggcgucaaugucGCcgaGGCCGcGCGcGGCa -3'
miRNA:   3'- -UCGUCUAGCG-------------UGa--CCGGCuUGUcCCG- -5'
26839 3' -56.9 NC_005809.1 + 33768 0.66 0.53361
Target:  5'- cAGCAGAUCgGUACUGaCCG-GCGcGGCc -3'
miRNA:   3'- -UCGUCUAG-CGUGACcGGCuUGUcCCG- -5'
26839 3' -56.9 NC_005809.1 + 34267 0.66 0.522854
Target:  5'- gAGCAGcgCGCaccGCUGGCUGcacugccccGGCAGcguGGCc -3'
miRNA:   3'- -UCGUCuaGCG---UGACCGGC---------UUGUC---CCG- -5'
26839 3' -56.9 NC_005809.1 + 14321 0.66 0.501603
Target:  5'- --uGGcgCGCGCcuUGGCUGAACugccGGGCc -3'
miRNA:   3'- ucgUCuaGCGUG--ACCGGCUUGu---CCCG- -5'
26839 3' -56.9 NC_005809.1 + 23525 0.66 0.501603
Target:  5'- cGCuGAUCGaCGCcgccggcGGCCGcuacCAGGGCu -3'
miRNA:   3'- uCGuCUAGC-GUGa------CCGGCuu--GUCCCG- -5'
26839 3' -56.9 NC_005809.1 + 37953 0.66 0.501603
Target:  5'- cGGCAGcgCGgGCcaacauuggccUGGCUGAcCuGGGCg -3'
miRNA:   3'- -UCGUCuaGCgUG-----------ACCGGCUuGuCCCG- -5'
26839 3' -56.9 NC_005809.1 + 16255 0.67 0.491119
Target:  5'- uGGCGGAUgGCGUUGGCCucGCGcGcGGCc -3'
miRNA:   3'- -UCGUCUAgCGUGACCGGcuUGU-C-CCG- -5'
26839 3' -56.9 NC_005809.1 + 26054 0.67 0.491119
Target:  5'- cGGCGGG-CGCGCUccaugcgcucGG-CGAACucGGGGCg -3'
miRNA:   3'- -UCGUCUaGCGUGA----------CCgGCUUG--UCCCG- -5'
26839 3' -56.9 NC_005809.1 + 22562 0.67 0.480739
Target:  5'- uGCAGG-CGCGCcauGCCGAGCAaguuGGCg -3'
miRNA:   3'- uCGUCUaGCGUGac-CGGCUUGUc---CCG- -5'
26839 3' -56.9 NC_005809.1 + 32846 0.67 0.480739
Target:  5'- cGGCu--UCGC-CUGGCCGcaGACGGucGGCg -3'
miRNA:   3'- -UCGucuAGCGuGACCGGC--UUGUC--CCG- -5'
26839 3' -56.9 NC_005809.1 + 42183 0.67 0.480739
Target:  5'- -aCAGucgCGCGCUGGCCGcgcucaaucGGCAGGccaaGCa -3'
miRNA:   3'- ucGUCua-GCGUGACCGGC---------UUGUCC----CG- -5'
26839 3' -56.9 NC_005809.1 + 31704 0.67 0.470466
Target:  5'- cGCGcAUCGCGCcGaCCGAagccacGCAGGGCc -3'
miRNA:   3'- uCGUcUAGCGUGaCcGGCU------UGUCCCG- -5'
26839 3' -56.9 NC_005809.1 + 31590 0.67 0.470466
Target:  5'- uGCA-AUCcgGC-CUGGCCGAACAGguGGCc -3'
miRNA:   3'- uCGUcUAG--CGuGACCGGCUUGUC--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.