Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26839 | 5' | -56.8 | NC_005809.1 | + | 34017 | 0.66 | 0.535951 |
Target: 5'- cUGUCGCUGccCGCCAuCGGCGcGGCu -3' miRNA: 3'- uACGGUGACaaGCGGU-GCCGCcUUGu -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 25751 | 0.66 | 0.535951 |
Target: 5'- -aGCaCGCUGggcgCGCUgcuggGCGGCGGcAACGa -3' miRNA: 3'- uaCG-GUGACaa--GCGG-----UGCCGCC-UUGU- -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 10979 | 0.66 | 0.525101 |
Target: 5'- -gGCCAcCUGUUCgGCCA-GGcCGGAuuGCAu -3' miRNA: 3'- uaCGGU-GACAAG-CGGUgCC-GCCU--UGU- -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 34656 | 0.67 | 0.482609 |
Target: 5'- -cGCCGgUGUUCGCCcuCGGCaagaugGGAGgCAa -3' miRNA: 3'- uaCGGUgACAAGCGGu-GCCG------CCUU-GU- -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 32931 | 0.67 | 0.472244 |
Target: 5'- -gGCUGCUGUUCgGCCAgGGCGaccACGg -3' miRNA: 3'- uaCGGUGACAAG-CGGUgCCGCcu-UGU- -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 26117 | 0.67 | 0.472244 |
Target: 5'- -cGCCAUgccggcaugUGUUCGUCGCGGCaGAuuuggcGCAg -3' miRNA: 3'- uaCGGUG---------ACAAGCGGUGCCGcCU------UGU- -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 25099 | 0.67 | 0.441847 |
Target: 5'- -cGCCGCUGUUCgugcagGCCcUGGCGuGGCAc -3' miRNA: 3'- uaCGGUGACAAG------CGGuGCCGCcUUGU- -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 40595 | 0.68 | 0.42221 |
Target: 5'- -aGCCACUGgcagguggCGCC-CGuaucGCGGGGCAu -3' miRNA: 3'- uaCGGUGACaa------GCGGuGC----CGCCUUGU- -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 38526 | 0.68 | 0.403106 |
Target: 5'- -gGCCGCUGgccugccgcUCGCCGCGGcCGGc--- -3' miRNA: 3'- uaCGGUGACa--------AGCGGUGCC-GCCuugu -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 41278 | 0.68 | 0.384559 |
Target: 5'- -cGCC-CUGggCGCgGCGGUGuGGGCGg -3' miRNA: 3'- uaCGGuGACaaGCGgUGCCGC-CUUGU- -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 11845 | 0.69 | 0.349201 |
Target: 5'- -cGCCGCgGUUgGCCugGGCG-AACc -3' miRNA: 3'- uaCGGUGaCAAgCGGugCCGCcUUGu -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 22114 | 0.69 | 0.33241 |
Target: 5'- --cCCACUGUUccagcgCGCCGCGGUcGAACAg -3' miRNA: 3'- uacGGUGACAA------GCGGUGCCGcCUUGU- -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 9496 | 0.69 | 0.33241 |
Target: 5'- cAUGCCAgcCUGUUcCGCCGUGGC-GAACAg -3' miRNA: 3'- -UACGGU--GACAA-GCGGUGCCGcCUUGU- -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 22576 | 0.69 | 0.33241 |
Target: 5'- uGUGCCGCUucUCGCCGCGGUu--GCGa -3' miRNA: 3'- -UACGGUGAcaAGCGGUGCCGccuUGU- -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 36783 | 0.7 | 0.316221 |
Target: 5'- cUGgCGCUGc-CGCgAUGGCGGGACAc -3' miRNA: 3'- uACgGUGACaaGCGgUGCCGCCUUGU- -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 489 | 0.7 | 0.316221 |
Target: 5'- gAUGCCucggcagcauACUG--CGCCGCGGCGGcuuGCAg -3' miRNA: 3'- -UACGG----------UGACaaGCGGUGCCGCCu--UGU- -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 16425 | 0.7 | 0.308351 |
Target: 5'- -gGCCGCgggGUaaUCGCCgGCGGCGuuGAACAc -3' miRNA: 3'- uaCGGUGa--CA--AGCGG-UGCCGC--CUUGU- -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 30671 | 0.7 | 0.300633 |
Target: 5'- -gGCCGCUGggUGUagGCGGCGGGAa- -3' miRNA: 3'- uaCGGUGACaaGCGg-UGCCGCCUUgu -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 20443 | 0.72 | 0.244226 |
Target: 5'- cGUGCaaagcCUGUUCGaCCGCGGCgcgcuGGAACAg -3' miRNA: 3'- -UACGgu---GACAAGC-GGUGCCG-----CCUUGU- -5' |
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26839 | 5' | -56.8 | NC_005809.1 | + | 40413 | 0.72 | 0.218884 |
Target: 5'- -cGCaACUGUUCGCCaacguguACGGCGGcGCGg -3' miRNA: 3'- uaCGgUGACAAGCGG-------UGCCGCCuUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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