miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2684 3' -57.2 NC_001491.2 + 3006 0.66 0.883485
Target:  5'- cGGGAGCgGGCGUuugucUGGGUGgcccggcagcagGugGCGGu -3'
miRNA:   3'- cCCCUCGaCCGCG-----GCUCAU------------UugCGCU- -5'
2684 3' -57.2 NC_001491.2 + 81500 0.66 0.869291
Target:  5'- cGGaGAGCgccGaCGCCGccacgccccaGGUAAACGCGAg -3'
miRNA:   3'- cCC-CUCGac-C-GCGGC----------UCAUUUGCGCU- -5'
2684 3' -57.2 NC_001491.2 + 28822 0.66 0.869291
Target:  5'- uGGGGcauGGCUGG-GCCGGGgu--CGCc- -3'
miRNA:   3'- -CCCC---UCGACCgCGGCUCauuuGCGcu -5'
2684 3' -57.2 NC_001491.2 + 71173 0.66 0.861879
Target:  5'- cGGGGGUUGGCGUaaagcuuccUGcGU-GGCGCGAa -3'
miRNA:   3'- cCCCUCGACCGCG---------GCuCAuUUGCGCU- -5'
2684 3' -57.2 NC_001491.2 + 12156 0.66 0.851164
Target:  5'- aGGuGGGGCggguuggcauugcGGCGgCGAGcGAGCGCGc -3'
miRNA:   3'- -CC-CCUCGa------------CCGCgGCUCaUUUGCGCu -5'
2684 3' -57.2 NC_001491.2 + 4917 0.66 0.846455
Target:  5'- cGGGaGAGCcGGCgGCCGAcgggGUuuuCGCGGc -3'
miRNA:   3'- -CCC-CUCGaCCG-CGGCU----CAuuuGCGCU- -5'
2684 3' -57.2 NC_001491.2 + 2719 0.66 0.845663
Target:  5'- cGGGGAGcCUGGUGgCCcgGGGUGGccacccuGCGCu- -3'
miRNA:   3'- -CCCCUC-GACCGC-GG--CUCAUU-------UGCGcu -5'
2684 3' -57.2 NC_001491.2 + 4840 0.67 0.836019
Target:  5'- gGGGGaAGC-GGCGCCGGagcggcagcucuucGggGugGCGGc -3'
miRNA:   3'- -CCCC-UCGaCCGCGGCU--------------CauUugCGCU- -5'
2684 3' -57.2 NC_001491.2 + 12516 0.67 0.830272
Target:  5'- cGGGGcGGCgucgcGGCGgcggccguggaCCGAGcGGGCGCGGg -3'
miRNA:   3'- -CCCC-UCGa----CCGC-----------GGCUCaUUUGCGCU- -5'
2684 3' -57.2 NC_001491.2 + 10975 0.67 0.821914
Target:  5'- gGGGGAGCgguaggGGagGCCGAGcggGGGagaGCGGu -3'
miRNA:   3'- -CCCCUCGa-----CCg-CGGCUCa--UUUg--CGCU- -5'
2684 3' -57.2 NC_001491.2 + 27105 0.67 0.821914
Target:  5'- cGGGcGGCccGGCGCCGcuccgGAGCGCGu -3'
miRNA:   3'- -CCCcUCGa-CCGCGGCuca--UUUGCGCu -5'
2684 3' -57.2 NC_001491.2 + 4408 0.67 0.813387
Target:  5'- cGGGGugagaagcGGCUcGCGCUG-GUAGACGCc- -3'
miRNA:   3'- -CCCC--------UCGAcCGCGGCuCAUUUGCGcu -5'
2684 3' -57.2 NC_001491.2 + 20727 0.67 0.808193
Target:  5'- uGGGAGCcgcggucguuguuguUGGgGUCGuuGUAGAUGCGGu -3'
miRNA:   3'- cCCCUCG---------------ACCgCGGCu-CAUUUGCGCU- -5'
2684 3' -57.2 NC_001491.2 + 2296 0.67 0.804699
Target:  5'- -aGGGGCUcGCGCCGAGagccgccgGGGCGgGAg -3'
miRNA:   3'- ccCCUCGAcCGCGGCUCa-------UUUGCgCU- -5'
2684 3' -57.2 NC_001491.2 + 24742 0.68 0.799413
Target:  5'- cGGGGAcccGCgGGCGCCcgccgcccgccgggcGGG-AGACGUGAc -3'
miRNA:   3'- -CCCCU---CGaCCGCGG---------------CUCaUUUGCGCU- -5'
2684 3' -57.2 NC_001491.2 + 148301 0.68 0.795859
Target:  5'- uGGGGAucGgaGcGCGaCGAGUAGACGCc- -3'
miRNA:   3'- -CCCCU--CgaC-CGCgGCUCAUUUGCGcu -5'
2684 3' -57.2 NC_001491.2 + 30043 0.68 0.777755
Target:  5'- uGGGAGg-GGCGCCGuGUu-ACGuCGAu -3'
miRNA:   3'- cCCCUCgaCCGCGGCuCAuuUGC-GCU- -5'
2684 3' -57.2 NC_001491.2 + 24658 0.68 0.759142
Target:  5'- gGGGGGGaUGcGCGCCccGAGgcGGCGCu- -3'
miRNA:   3'- -CCCCUCgAC-CGCGG--CUCauUUGCGcu -5'
2684 3' -57.2 NC_001491.2 + 70583 0.68 0.759142
Target:  5'- uGGGGuAGUUGGCGUCuc-UGAACGCa- -3'
miRNA:   3'- -CCCC-UCGACCGCGGcucAUUUGCGcu -5'
2684 3' -57.2 NC_001491.2 + 27983 0.69 0.717731
Target:  5'- uGGGGGGUUGGCGCUugcggcgcuuuuugGcAGcgcuAGCGCGGg -3'
miRNA:   3'- -CCCCUCGACCGCGG--------------C-UCau--UUGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.