Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
26840 | 3' | -60.7 | NC_005809.1 | + | 31718 | 0.67 | 0.324475 |
Target: 5'- aGCCCGCCGCGcGCGGgcuuuuucaCGCCUaaaaauauGCGc -3' miRNA: 3'- gCGGGUGGUGCuCGUCaa-------GCGGG--------CGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 6740 | 0.67 | 0.324475 |
Target: 5'- gGgCCGCCGCGcucaauAGCggaaaggucuuuAGUUUGCCCGCc -3' miRNA: 3'- gCgGGUGGUGC------UCG------------UCAAGCGGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 26737 | 0.67 | 0.348363 |
Target: 5'- gGgCCACCGCcAGCg---CGCCCGCu -3' miRNA: 3'- gCgGGUGGUGcUCGucaaGCGGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 11491 | 0.67 | 0.348363 |
Target: 5'- uCGCCugcgaCACCGCaaaGGGCAG--CGCCUGCGc -3' miRNA: 3'- -GCGG-----GUGGUG---CUCGUCaaGCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 39752 | 0.67 | 0.340263 |
Target: 5'- gCGCgUgGCCGCGAGCAccUgGCCCGaCGa -3' miRNA: 3'- -GCG-GgUGGUGCUCGUcaAgCGGGC-GC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 17420 | 0.67 | 0.340263 |
Target: 5'- gCGCCCAcgucgcCCuuGAGCAGUggcCCCGCc -3' miRNA: 3'- -GCGGGU------GGugCUCGUCAagcGGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 25057 | 0.67 | 0.3323 |
Target: 5'- cCGCCguUACCAuCGGGCAGcaUCGCCacccaGCGc -3' miRNA: 3'- -GCGG--GUGGU-GCUCGUCa-AGCGGg----CGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 5535 | 0.67 | 0.3323 |
Target: 5'- cCGCCCAgguuCCGCc--CAGgUCGCCCGCc -3' miRNA: 3'- -GCGGGU----GGUGcucGUCaAGCGGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 25366 | 0.67 | 0.3323 |
Target: 5'- aGCCgGCCAcCGGGCAGg-CGCCagaaGCc -3' miRNA: 3'- gCGGgUGGU-GCUCGUCaaGCGGg---CGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 4898 | 0.67 | 0.3323 |
Target: 5'- gGCCUcguuuucgGCCACGguggaaacgucGGCAGcgaUGCCCGCGa -3' miRNA: 3'- gCGGG--------UGGUGC-----------UCGUCaa-GCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 27418 | 0.66 | 0.364972 |
Target: 5'- uCGCgCGCCugGcGCAccgCGCCCgGCGg -3' miRNA: 3'- -GCGgGUGGugCuCGUcaaGCGGG-CGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 16312 | 0.66 | 0.399797 |
Target: 5'- aGCCgACCAgGccGGCGGgu-GCCCGUGc -3' miRNA: 3'- gCGGgUGGUgC--UCGUCaagCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 25241 | 0.66 | 0.364972 |
Target: 5'- aGCCCAUgACGAagcGCAccugUUGCUCGCGc -3' miRNA: 3'- gCGGGUGgUGCU---CGUca--AGCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 3224 | 0.66 | 0.373479 |
Target: 5'- uGCCCGCCACGAuGaauaaUUCGaCCUGCc -3' miRNA: 3'- gCGGGUGGUGCU-Cguc--AAGC-GGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 17847 | 0.66 | 0.373479 |
Target: 5'- uGCCCGCCACcguGGCcucgUCGCCCa-- -3' miRNA: 3'- gCGGGUGGUGc--UCGuca-AGCGGGcgc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 24576 | 0.66 | 0.373479 |
Target: 5'- gGCCgGCCACGGuCGGgcCGUCCgGCGu -3' miRNA: 3'- gCGGgUGGUGCUcGUCaaGCGGG-CGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 2211 | 0.66 | 0.390893 |
Target: 5'- aCGCCCucgucggguagcACCACGcgcAGCAGgcggCGCguggCCGCGc -3' miRNA: 3'- -GCGGG------------UGGUGC---UCGUCaa--GCG----GGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 11601 | 0.66 | 0.390893 |
Target: 5'- gGCUgGCCGcCGGGCAGcagUGCCaGCGg -3' miRNA: 3'- gCGGgUGGU-GCUCGUCaa-GCGGgCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 29313 | 0.66 | 0.399797 |
Target: 5'- uGCCCAgCACuucaaGGCGGUggcggUCGCCgGCc -3' miRNA: 3'- gCGGGUgGUGc----UCGUCA-----AGCGGgCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 38839 | 0.66 | 0.399797 |
Target: 5'- cCGCCCucaucaaauCCGCGAGCAugagcGgaUGCgCCGCa -3' miRNA: 3'- -GCGGGu--------GGUGCUCGU-----CaaGCG-GGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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