Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26840 | 3' | -60.7 | NC_005809.1 | + | 25642 | 0.68 | 0.273556 |
Target: 5'- gCGUCCACCuCG-GCgAGUUCuGCCgGCGu -3' miRNA: 3'- -GCGGGUGGuGCuCG-UCAAG-CGGgCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 26422 | 0.68 | 0.266828 |
Target: 5'- aCGCCCACCACcaucAGCGug-CGgCCGCa -3' miRNA: 3'- -GCGGGUGGUGc---UCGUcaaGCgGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 26430 | 0.68 | 0.301828 |
Target: 5'- uGCCCucgACCuCGuGCAGUUCGCggaUGCGc -3' miRNA: 3'- gCGGG---UGGuGCuCGUCAAGCGg--GCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 26737 | 0.67 | 0.348363 |
Target: 5'- gGgCCACCGCcAGCg---CGCCCGCu -3' miRNA: 3'- gCgGGUGGUGcUCGucaaGCGGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 27252 | 0.68 | 0.294554 |
Target: 5'- gCGCCCcaggcucuugGCCgaggcaAUGAaccGCAGUUCGCCgCGCGc -3' miRNA: 3'- -GCGGG----------UGG------UGCU---CGUCAAGCGG-GCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 27418 | 0.66 | 0.364972 |
Target: 5'- uCGCgCGCCugGcGCAccgCGCCCgGCGg -3' miRNA: 3'- -GCGgGUGGugCuCGUcaaGCGGG-CGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 27529 | 0.66 | 0.364972 |
Target: 5'- uGCCCGCaucaaCGCGGGCA--UCGCCaacaccaaCGCGg -3' miRNA: 3'- gCGGGUG-----GUGCUCGUcaAGCGG--------GCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 27667 | 0.7 | 0.212188 |
Target: 5'- gGCCgGCCAgcAGCAGaUCGCCgCGCa -3' miRNA: 3'- gCGGgUGGUgcUCGUCaAGCGG-GCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 28143 | 0.68 | 0.287418 |
Target: 5'- uCGCCCAaCACGGugccGCAGgcgCGCCUgGCGa -3' miRNA: 3'- -GCGGGUgGUGCU----CGUCaa-GCGGG-CGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 29313 | 0.66 | 0.399797 |
Target: 5'- uGCCCAgCACuucaaGGCGGUggcggUCGCCgGCc -3' miRNA: 3'- gCGGGUgGUGc----UCGUCA-----AGCGGgCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 30891 | 0.67 | 0.308492 |
Target: 5'- aGUCCGCCGCagucugacaccuuGGGCAGUgguguuUCGUCCgGCGu -3' miRNA: 3'- gCGGGUGGUG-------------CUCGUCA------AGCGGG-CGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 31654 | 0.66 | 0.356599 |
Target: 5'- gGCCCugCaaaccgGCGGGCAGgUCGCCauuccgGUGg -3' miRNA: 3'- gCGGGugG------UGCUCGUCaAGCGGg-----CGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 31718 | 0.67 | 0.324475 |
Target: 5'- aGCCCGCCGCGcGCGGgcuuuuucaCGCCUaaaaauauGCGc -3' miRNA: 3'- gCGGGUGGUGCuCGUCaa-------GCGGG--------CGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 32673 | 0.74 | 0.10544 |
Target: 5'- uGCCCgacgugaaGCC-CGAGCAGUUCGCCgaCGUGc -3' miRNA: 3'- gCGGG--------UGGuGCUCGUCAAGCGG--GCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 32837 | 1.09 | 0.000232 |
Target: 5'- gCGCCCACCACGAGCAGUUCGCCCGCGg -3' miRNA: 3'- -GCGGGUGGUGCUCGUCAAGCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 33016 | 0.69 | 0.243713 |
Target: 5'- uGCUCGCCaccgGCGAGCAGaUCGCacuggccgaacagggCCGCa -3' miRNA: 3'- gCGGGUGG----UGCUCGUCaAGCG---------------GGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 33374 | 0.67 | 0.340263 |
Target: 5'- gCGCCgCGCCGcCGAGCAGgccaacgUCGaCgGCGc -3' miRNA: 3'- -GCGG-GUGGU-GCUCGUCa------AGCgGgCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 34040 | 0.7 | 0.201432 |
Target: 5'- gGCCUgcgauACCugG-GCaAGUUCGCCgGCGa -3' miRNA: 3'- gCGGG-----UGGugCuCG-UCAAGCGGgCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 35565 | 0.71 | 0.181338 |
Target: 5'- aCGCCCAUCacGCGAGCcGaccCGCUCGCGc -3' miRNA: 3'- -GCGGGUGG--UGCUCGuCaa-GCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 36134 | 0.68 | 0.301828 |
Target: 5'- aCGCCU-UCGCGGGCGGUggugUCGCgaGCGa -3' miRNA: 3'- -GCGGGuGGUGCUCGUCA----AGCGggCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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