Results 41 - 60 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26840 | 3' | -60.7 | NC_005809.1 | + | 16596 | 0.67 | 0.3323 |
Target: 5'- gGCCgACCACGcgauGguGUUgGCgCCGCc -3' miRNA: 3'- gCGGgUGGUGCu---CguCAAgCG-GGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 16502 | 0.73 | 0.125741 |
Target: 5'- gGCCCGCCcCGAGUucgccgagcgcauggAGcgCGCCCGCc -3' miRNA: 3'- gCGGGUGGuGCUCG---------------UCaaGCGGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 16312 | 0.66 | 0.399797 |
Target: 5'- aGCCgACCAgGccGGCGGgu-GCCCGUGc -3' miRNA: 3'- gCGGgUGGUgC--UCGUCaagCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 15995 | 0.68 | 0.287418 |
Target: 5'- gGUgCGCCGCGcGCAGggacaggUCGCCgGUGa -3' miRNA: 3'- gCGgGUGGUGCuCGUCa------AGCGGgCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 14750 | 0.76 | 0.071294 |
Target: 5'- gGCgCCACCGCGGGCAG--CGCgCGCGa -3' miRNA: 3'- gCG-GGUGGUGCUCGUCaaGCGgGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 14513 | 0.71 | 0.186188 |
Target: 5'- uGCCCGCUguuCGAGCAGaccgUCGCCgaCGUGu -3' miRNA: 3'- gCGGGUGGu--GCUCGUCa---AGCGG--GCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 13495 | 0.71 | 0.193172 |
Target: 5'- uGCCgACCGCGccuuugggcgagguaAGCGGUUugcCGUCCGCGc -3' miRNA: 3'- gCGGgUGGUGC---------------UCGUCAA---GCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 12667 | 0.71 | 0.191153 |
Target: 5'- uCGCCCAUCAUGcGCAGgcgcgugUCgagGCCCGCc -3' miRNA: 3'- -GCGGGUGGUGCuCGUCa------AG---CGGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 11601 | 0.66 | 0.390893 |
Target: 5'- gGCUgGCCGcCGGGCAGcagUGCCaGCGg -3' miRNA: 3'- gCGGgUGGU-GCUCGUCaa-GCGGgCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 11491 | 0.67 | 0.348363 |
Target: 5'- uCGCCugcgaCACCGCaaaGGGCAG--CGCCUGCGc -3' miRNA: 3'- -GCGG-----GUGGUG---CUCGUCaaGCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 11241 | 0.68 | 0.301828 |
Target: 5'- aCGCCCACUAgCGuGGCgaugagGGUUUGCgCUGCGg -3' miRNA: 3'- -GCGGGUGGU-GC-UCG------UCAAGCG-GGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 11125 | 0.67 | 0.309239 |
Target: 5'- gGUUCAaacgUGCGAGCAGUUCGgCCUGCu -3' miRNA: 3'- gCGGGUg---GUGCUCGUCAAGC-GGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 10924 | 0.68 | 0.279726 |
Target: 5'- uGCCCGCCGguuugcagggccuCGGGCAGUU-GCgCgGCGa -3' miRNA: 3'- gCGGGUGGU-------------GCUCGUCAAgCG-GgCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 9723 | 0.67 | 0.309239 |
Target: 5'- aCGCCUcgaaGCCGCGGGCGaacUGCUCGUGg -3' miRNA: 3'- -GCGGG----UGGUGCUCGUcaaGCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 8400 | 0.77 | 0.069115 |
Target: 5'- cCGCCCACgugucgggcaGCGAGCAGUUCGCgggggcgUCGCGg -3' miRNA: 3'- -GCGGGUGg---------UGCUCGUCAAGCG-------GGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 6991 | 0.67 | 0.340263 |
Target: 5'- gGCUuucaCACgCGCGAGCGGgUCGgCUCGCGu -3' miRNA: 3'- gCGG----GUG-GUGCUCGUCaAGC-GGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 6740 | 0.67 | 0.324475 |
Target: 5'- gGgCCGCCGCGcucaauAGCggaaaggucuuuAGUUUGCCCGCc -3' miRNA: 3'- gCgGGUGGUGC------UCG------------UCAAGCGGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 5603 | 0.7 | 0.20675 |
Target: 5'- gGCCCACUcgGCGGGguGcguUUCGCgCGUGg -3' miRNA: 3'- gCGGGUGG--UGCUCguC---AAGCGgGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 5535 | 0.67 | 0.3323 |
Target: 5'- cCGCCCAgguuCCGCc--CAGgUCGCCCGCc -3' miRNA: 3'- -GCGGGU----GGUGcucGUCaAGCGGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 4898 | 0.67 | 0.3323 |
Target: 5'- gGCCUcguuuucgGCCACGguggaaacgucGGCAGcgaUGCCCGCGa -3' miRNA: 3'- gCGGG--------UGGUGC-----------UCGUCaa-GCGGGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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