Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26840 | 3' | -60.7 | NC_005809.1 | + | 32837 | 1.09 | 0.000232 |
Target: 5'- gCGCCCACCACGAGCAGUUCGCCCGCGg -3' miRNA: 3'- -GCGGGUGGUGCUCGUCAAGCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 8400 | 0.77 | 0.069115 |
Target: 5'- cCGCCCACgugucgggcaGCGAGCAGUUCGCgggggcgUCGCGg -3' miRNA: 3'- -GCGGGUGg---------UGCUCGUCAAGCG-------GGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 14750 | 0.76 | 0.071294 |
Target: 5'- gGCgCCACCGCGGGCAG--CGCgCGCGa -3' miRNA: 3'- gCG-GGUGGUGCUCGUCaaGCGgGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 32673 | 0.74 | 0.10544 |
Target: 5'- uGCCCgacgugaaGCC-CGAGCAGUUCGCCgaCGUGc -3' miRNA: 3'- gCGGG--------UGGuGCUCGUCAAGCGG--GCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 16502 | 0.73 | 0.125741 |
Target: 5'- gGCCCGCCcCGAGUucgccgagcgcauggAGcgCGCCCGCc -3' miRNA: 3'- gCGGGUGGuGCUCG---------------UCaaGCGGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 2367 | 0.73 | 0.131356 |
Target: 5'- uCGgCCugCACGuGGCAGa-CGCCCGCGu -3' miRNA: 3'- -GCgGGugGUGC-UCGUCaaGCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 24673 | 0.73 | 0.131356 |
Target: 5'- gCGCCCGCCGCGGGCcacGUccaCGCCCagGCu -3' miRNA: 3'- -GCGGGUGGUGCUCGu--CAa--GCGGG--CGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 18904 | 0.72 | 0.15873 |
Target: 5'- gGCCCgaccgagggucGCCugGuGCAGUUgcUGCCCGCc -3' miRNA: 3'- gCGGG-----------UGGugCuCGUCAA--GCGGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 17410 | 0.71 | 0.173348 |
Target: 5'- cCGCCgACCACGAGCgagggccGGUggguuaucgacuucuUCGCcCCGUGg -3' miRNA: 3'- -GCGGgUGGUGCUCG-------UCA---------------AGCG-GGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 35565 | 0.71 | 0.181338 |
Target: 5'- aCGCCCAUCacGCGAGCcGaccCGCUCGCGc -3' miRNA: 3'- -GCGGGUGG--UGCUCGuCaa-GCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 38052 | 0.71 | 0.186188 |
Target: 5'- cCGCCCAgcacgccacguUCACGGGCGc--CGCCCGUGa -3' miRNA: 3'- -GCGGGU-----------GGUGCUCGUcaaGCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 14513 | 0.71 | 0.186188 |
Target: 5'- uGCCCGCUguuCGAGCAGaccgUCGCCgaCGUGu -3' miRNA: 3'- gCGGGUGGu--GCUCGUCa---AGCGG--GCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 12667 | 0.71 | 0.191153 |
Target: 5'- uCGCCCAUCAUGcGCAGgcgcgugUCgagGCCCGCc -3' miRNA: 3'- -GCGGGUGGUGCuCGUCa------AG---CGGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 13495 | 0.71 | 0.193172 |
Target: 5'- uGCCgACCGCGccuuugggcgagguaAGCGGUUugcCGUCCGCGc -3' miRNA: 3'- gCGGgUGGUGC---------------UCGUCAA---GCGGGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 34040 | 0.7 | 0.201432 |
Target: 5'- gGCCUgcgauACCugG-GCaAGUUCGCCgGCGa -3' miRNA: 3'- gCGGG-----UGGugCuCG-UCAAGCGGgCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 5603 | 0.7 | 0.20675 |
Target: 5'- gGCCCACUcgGCGGGguGcguUUCGCgCGUGg -3' miRNA: 3'- gCGGGUGG--UGCUCguC---AAGCGgGCGC- -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 40576 | 0.7 | 0.210544 |
Target: 5'- gCGCCUgggccucaagaucaGCCACuGGCAGguggCGCCCGUa -3' miRNA: 3'- -GCGGG--------------UGGUGcUCGUCaa--GCGGGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 27667 | 0.7 | 0.212188 |
Target: 5'- gGCCgGCCAgcAGCAGaUCGCCgCGCa -3' miRNA: 3'- gCGGgUGGUgcUCGUCaAGCGG-GCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 33016 | 0.69 | 0.243713 |
Target: 5'- uGCUCGCCaccgGCGAGCAGaUCGCacuggccgaacagggCCGCa -3' miRNA: 3'- gCGGGUGG----UGCUCGUCaAGCG---------------GGCGc -5' |
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26840 | 3' | -60.7 | NC_005809.1 | + | 26422 | 0.68 | 0.266828 |
Target: 5'- aCGCCCACCACcaucAGCGug-CGgCCGCa -3' miRNA: 3'- -GCGGGUGGUGc---UCGUcaaGCgGGCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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