miRNA display CGI


Results 21 - 40 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26842 3' -61.9 NC_005809.1 + 30095 0.66 0.30318
Target:  5'- gGCGCCacGGCCcuugucccaggcgauGAGGCCGCGcCAGaacacgccgccGGCCUg -3'
miRNA:   3'- -CGCGG--CUGG---------------CUUCGGUGC-GUC-----------CCGGA- -5'
26842 3' -61.9 NC_005809.1 + 5753 0.66 0.300251
Target:  5'- cGCGCCGGgCagcGAGUgCGC-CAGGGCCUu -3'
miRNA:   3'- -CGCGGCUgGc--UUCG-GUGcGUCCCGGA- -5'
26842 3' -61.9 NC_005809.1 + 14812 0.66 0.300251
Target:  5'- cGUGuCCGAgCCGGacgagggcagcgAGUUGCGCgAGGGCCUc -3'
miRNA:   3'- -CGC-GGCU-GGCU------------UCGGUGCG-UCCCGGA- -5'
26842 3' -61.9 NC_005809.1 + 1963 0.66 0.300251
Target:  5'- aGCGCgCGGCCcuggggGAAGgCACGCuguaGGCCg -3'
miRNA:   3'- -CGCG-GCUGG------CUUCgGUGCGuc--CCGGa -5'
26842 3' -61.9 NC_005809.1 + 8206 0.66 0.300251
Target:  5'- cGCGCaCGGCCucguAGUCGCGCuggucGGcGGCCg -3'
miRNA:   3'- -CGCG-GCUGGcu--UCGGUGCG-----UC-CCGGa -5'
26842 3' -61.9 NC_005809.1 + 6351 0.67 0.293027
Target:  5'- aGCGcCCGGcCCGAAgGCCgggGCGCuGGGUUa -3'
miRNA:   3'- -CGC-GGCU-GGCUU-CGG---UGCGuCCCGGa -5'
26842 3' -61.9 NC_005809.1 + 10521 0.67 0.293027
Target:  5'- cUGCUGACCGccGGCCACGCuuuccGCCg -3'
miRNA:   3'- cGCGGCUGGCu-UCGGUGCGucc--CGGa -5'
26842 3' -61.9 NC_005809.1 + 37466 0.67 0.293027
Target:  5'- gGCGCCaGCCGca-CCggACGCuGGGCCg -3'
miRNA:   3'- -CGCGGcUGGCuucGG--UGCGuCCCGGa -5'
26842 3' -61.9 NC_005809.1 + 32367 0.67 0.293027
Target:  5'- uCGCCG-CCGAggccccGGCCGCccaGCAGGaaGCCa -3'
miRNA:   3'- cGCGGCuGGCU------UCGGUG---CGUCC--CGGa -5'
26842 3' -61.9 NC_005809.1 + 35797 0.67 0.293027
Target:  5'- gGCGCUGaACC-AGGCCAUcgaGCAGGucGCCa -3'
miRNA:   3'- -CGCGGC-UGGcUUCGGUG---CGUCC--CGGa -5'
26842 3' -61.9 NC_005809.1 + 21937 0.67 0.285939
Target:  5'- cCGCCGACCaAGGCCcaaCGGGGCa- -3'
miRNA:   3'- cGCGGCUGGcUUCGGugcGUCCCGga -5'
26842 3' -61.9 NC_005809.1 + 17490 0.67 0.285939
Target:  5'- gGCGCCGGgCGc-GCUGCGCuGGGUg- -3'
miRNA:   3'- -CGCGGCUgGCuuCGGUGCGuCCCGga -5'
26842 3' -61.9 NC_005809.1 + 13968 0.67 0.285238
Target:  5'- cGCGCCgguucaaggaacuGACCGAcaCCACGCugccGGuGGCCg -3'
miRNA:   3'- -CGCGG-------------CUGGCUucGGUGCG----UC-CCGGa -5'
26842 3' -61.9 NC_005809.1 + 811 0.67 0.278987
Target:  5'- cGCGCCGcgcccagcccuuGCCGAacgucGGCCA-GguGGGCa- -3'
miRNA:   3'- -CGCGGC------------UGGCU-----UCGGUgCguCCCGga -5'
26842 3' -61.9 NC_005809.1 + 9152 0.67 0.278987
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5'
26842 3' -61.9 NC_005809.1 + 9008 0.67 0.278987
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5'
26842 3' -61.9 NC_005809.1 + 9248 0.67 0.278987
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5'
26842 3' -61.9 NC_005809.1 + 9296 0.67 0.278987
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5'
26842 3' -61.9 NC_005809.1 + 9104 0.67 0.278987
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5'
26842 3' -61.9 NC_005809.1 + 9200 0.67 0.278987
Target:  5'- -gGCCGuGCCGGAuucGCCA-GCGGuGGCCg -3'
miRNA:   3'- cgCGGC-UGGCUU---CGGUgCGUC-CCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.