miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26842 5' -53.6 NC_005809.1 + 4356 0.66 0.760836
Target:  5'- gAGGaAUCG-GCCGGAcggcaggcGGAUgcgCAGCCa -3'
miRNA:   3'- gUUC-UGGCuCGGCCUu-------CCUAa--GUCGG- -5'
26842 5' -53.6 NC_005809.1 + 36404 0.66 0.760836
Target:  5'- gCAAGACCGGccugcGCUGGGAaGAUgacggCGGCg -3'
miRNA:   3'- -GUUCUGGCU-----CGGCCUUcCUAa----GUCGg -5'
26842 5' -53.6 NC_005809.1 + 34203 0.66 0.750235
Target:  5'- gCGAGGCCggguucGAGCCGGAcaucc-CGGCCg -3'
miRNA:   3'- -GUUCUGG------CUCGGCCUuccuaaGUCGG- -5'
26842 5' -53.6 NC_005809.1 + 22978 0.66 0.750235
Target:  5'- -----gCGucAGCCGGucGGAUUCGGCUu -3'
miRNA:   3'- guucugGC--UCGGCCuuCCUAAGUCGG- -5'
26842 5' -53.6 NC_005809.1 + 29636 0.66 0.739507
Target:  5'- --uGGCCGGGCUuGAugGGGAUgaugaggUAGCCg -3'
miRNA:   3'- guuCUGGCUCGGcCU--UCCUAa------GUCGG- -5'
26842 5' -53.6 NC_005809.1 + 15060 0.67 0.684397
Target:  5'- --cGACCGcGCCGaGAAGcuggCGGCCg -3'
miRNA:   3'- guuCUGGCuCGGC-CUUCcuaaGUCGG- -5'
26842 5' -53.6 NC_005809.1 + 889 0.67 0.684397
Target:  5'- gCAGGGCC-AGCaUGGuGGGGUUCaucccGGCCg -3'
miRNA:   3'- -GUUCUGGcUCG-GCCuUCCUAAG-----UCGG- -5'
26842 5' -53.6 NC_005809.1 + 6363 0.67 0.683277
Target:  5'- gAAGGCCGGggcGCUGGGuuacaccAGG--UCGGCCg -3'
miRNA:   3'- gUUCUGGCU---CGGCCU-------UCCuaAGUCGG- -5'
26842 5' -53.6 NC_005809.1 + 17840 0.67 0.673168
Target:  5'- uCGAGGCCGcgcaGGCgCGGu-GGAagCGGCCc -3'
miRNA:   3'- -GUUCUGGC----UCG-GCCuuCCUaaGUCGG- -5'
26842 5' -53.6 NC_005809.1 + 35986 0.67 0.661898
Target:  5'- aAAGACCGcagcccccuGGCCGaGgcGGAUggcaAGCCc -3'
miRNA:   3'- gUUCUGGC---------UCGGC-CuuCCUAag--UCGG- -5'
26842 5' -53.6 NC_005809.1 + 23575 0.68 0.594047
Target:  5'- gCAGGugCGGGCgGGggGcGAcgaUGGCCg -3'
miRNA:   3'- -GUUCugGCUCGgCCuuC-CUaa-GUCGG- -5'
26842 5' -53.6 NC_005809.1 + 4059 0.69 0.582799
Target:  5'- -cAGGCCagcGGCCcaGGggGGAUUggUAGCCa -3'
miRNA:   3'- guUCUGGc--UCGG--CCuuCCUAA--GUCGG- -5'
26842 5' -53.6 NC_005809.1 + 14814 0.69 0.560443
Target:  5'- --uGuCCGAGCCGGAcgAGGg--CAGCg -3'
miRNA:   3'- guuCuGGCUCGGCCU--UCCuaaGUCGg -5'
26842 5' -53.6 NC_005809.1 + 25491 0.7 0.502541
Target:  5'- cCGAGaACCGcGCCGGcuucgccuucgugcGcgaggugaAGGAUUCGGCCa -3'
miRNA:   3'- -GUUC-UGGCuCGGCC--------------U--------UCCUAAGUCGG- -5'
26842 5' -53.6 NC_005809.1 + 39539 0.7 0.49508
Target:  5'- cCAGGAUgGAGCagcacuGGAAGGAcgagCAGCUa -3'
miRNA:   3'- -GUUCUGgCUCGg-----CCUUCCUaa--GUCGG- -5'
26842 5' -53.6 NC_005809.1 + 3235 0.7 0.484511
Target:  5'- -cGGACCGucauacuaAGCCcccGGcGGGAUUCAGCUu -3'
miRNA:   3'- guUCUGGC--------UCGG---CCuUCCUAAGUCGG- -5'
26842 5' -53.6 NC_005809.1 + 13856 0.73 0.341356
Target:  5'- ---cGCCu-GCCGGAAGGuUUCGGCCu -3'
miRNA:   3'- guucUGGcuCGGCCUUCCuAAGUCGG- -5'
26842 5' -53.6 NC_005809.1 + 31749 1.12 0.00063
Target:  5'- uCAAGACCGAGCCGGAAGGAUUCAGCCg -3'
miRNA:   3'- -GUUCUGGCUCGGCCUUCCUAAGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.