miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26843 3' -60.5 NC_005809.1 + 16522 0.66 0.36537
Target:  5'- aGCGCAUGgAGCGcgcccgccGCGCGGGCuuugauGCCa -3'
miRNA:   3'- -CGCGUGCgUUGCa-------CGCGUCCGc-----CGGg -5'
26843 3' -60.5 NC_005809.1 + 24117 0.66 0.36031
Target:  5'- uGCGCGCGUAGgggucguaguccagcCGgcUGCGCGccUGGCCCa -3'
miRNA:   3'- -CGCGUGCGUU---------------GC--ACGCGUccGCCGGG- -5'
26843 3' -60.5 NC_005809.1 + 8656 0.66 0.356963
Target:  5'- cGCGC-CGUAcucGCuGUGUGCA-GCGGCUg -3'
miRNA:   3'- -CGCGuGCGU---UG-CACGCGUcCGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 15215 0.66 0.356963
Target:  5'- -gGCugGaCGA-GUGCuGCgAGGuCGGCCCg -3'
miRNA:   3'- cgCGugC-GUUgCACG-CG-UCC-GCCGGG- -5'
26843 3' -60.5 NC_005809.1 + 23523 0.66 0.356963
Target:  5'- -aGCGCGCcuuccaGGCG-GCGCAcGCGGUCg -3'
miRNA:   3'- cgCGUGCG------UUGCaCGCGUcCGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 3562 0.66 0.356963
Target:  5'- aGCGCA-GCAGCGggcuggGCGUAcaccgauccGCGGCCg -3'
miRNA:   3'- -CGCGUgCGUUGCa-----CGCGUc--------CGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 5338 0.66 0.356963
Target:  5'- gGCGCA-GCAugGcaucGCGCuGcGUGGCCg -3'
miRNA:   3'- -CGCGUgCGUugCa---CGCGuC-CGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 36317 0.66 0.355298
Target:  5'- cGCGCAgaucaacCGCAcCGUuaccggcGUGCAGGCccuGGCCg -3'
miRNA:   3'- -CGCGU-------GCGUuGCA-------CGCGUCCG---CCGGg -5'
26843 3' -60.5 NC_005809.1 + 13302 0.67 0.348692
Target:  5'- aGCGCGCcggggcCGGCGU-UGUAGGCGGCg- -3'
miRNA:   3'- -CGCGUGc-----GUUGCAcGCGUCCGCCGgg -5'
26843 3' -60.5 NC_005809.1 + 12140 0.67 0.348692
Target:  5'- cGCGcCACGCGcuGCGcuuccGCGUAGGCGucggggucaguGUCCg -3'
miRNA:   3'- -CGC-GUGCGU--UGCa----CGCGUCCGC-----------CGGG- -5'
26843 3' -60.5 NC_005809.1 + 37034 0.67 0.347873
Target:  5'- -gGCGgGCGACcUGgGCggaaccuGGGCGGCCg -3'
miRNA:   3'- cgCGUgCGUUGcACgCG-------UCCGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 29598 0.67 0.346238
Target:  5'- gGCGCGCGguuugccaguugucCAGCGccggGCGCuuGUGGCCg -3'
miRNA:   3'- -CGCGUGC--------------GUUGCa---CGCGucCGCCGGg -5'
26843 3' -60.5 NC_005809.1 + 8885 0.67 0.340559
Target:  5'- gGCGCGgGCAucauugugaAUG-GCGCuaucGGCGGCgCg -3'
miRNA:   3'- -CGCGUgCGU---------UGCaCGCGu---CCGCCGgG- -5'
26843 3' -60.5 NC_005809.1 + 23895 0.67 0.340559
Target:  5'- -gGCcCGCGugGUGUaacaggccggggGCGGGCGaccGCCCc -3'
miRNA:   3'- cgCGuGCGUugCACG------------CGUCCGC---CGGG- -5'
26843 3' -60.5 NC_005809.1 + 40199 0.67 0.339753
Target:  5'- aCGCACGCgGGCGUcugccacGUGCAGGCcgaauugcGGCgCa -3'
miRNA:   3'- cGCGUGCG-UUGCA-------CGCGUCCG--------CCGgG- -5'
26843 3' -60.5 NC_005809.1 + 7536 0.67 0.332564
Target:  5'- cGUGCGCucgGCGGCGUGCuCGaucuGCGGCgCCa -3'
miRNA:   3'- -CGCGUG---CGUUGCACGcGUc---CGCCG-GG- -5'
26843 3' -60.5 NC_005809.1 + 17074 0.67 0.324708
Target:  5'- cGCGCACGaagGCGaagccgGCGCGGuucuCGGCCg -3'
miRNA:   3'- -CGCGUGCgu-UGCa-----CGCGUCc---GCCGGg -5'
26843 3' -60.5 NC_005809.1 + 34924 0.67 0.324708
Target:  5'- cGUGUACGCAAgGagccgGCGUGGGuCGaGCCg -3'
miRNA:   3'- -CGCGUGCGUUgCa----CGCGUCC-GC-CGGg -5'
26843 3' -60.5 NC_005809.1 + 8997 0.67 0.32393
Target:  5'- cGC-CGCGCGGgG-GCGCuuccagcAGGCGGCgCa -3'
miRNA:   3'- -CGcGUGCGUUgCaCGCG-------UCCGCCGgG- -5'
26843 3' -60.5 NC_005809.1 + 18066 0.67 0.316991
Target:  5'- gGCGCGgGguGCGUGC-UGGGCcGCCg -3'
miRNA:   3'- -CGCGUgCguUGCACGcGUCCGcCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.