Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26845 | 3' | -60.2 | NC_005809.1 | + | 29649 | 0.66 | 0.408289 |
Target: 5'- ---aGCUGaCUAGCguuaUGGGCGCGGCc -3' miRNA: 3'- gccaUGACaGGUCGg---ACCCGUGCCGc -5' |
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26845 | 3' | -60.2 | NC_005809.1 | + | 15140 | 0.66 | 0.381405 |
Target: 5'- aGGgcCUG--CGGCCgccGGGCGCGGUGc -3' miRNA: 3'- gCCauGACagGUCGGa--CCCGUGCCGC- -5' |
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26845 | 3' | -60.2 | NC_005809.1 | + | 17865 | 0.66 | 0.378783 |
Target: 5'- gCGGcccgaccgACUGgcaccgauggaCAGCCUGGGCguggacguggcccGCGGCGg -3' miRNA: 3'- -GCCa-------UGACag---------GUCGGACCCG-------------UGCCGC- -5' |
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26845 | 3' | -60.2 | NC_005809.1 | + | 12283 | 0.67 | 0.331294 |
Target: 5'- gGGuUGCUGgcCCAGCgUGccGGCuACGGCGg -3' miRNA: 3'- gCC-AUGACa-GGUCGgAC--CCG-UGCCGC- -5' |
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26845 | 3' | -60.2 | NC_005809.1 | + | 17219 | 0.67 | 0.328919 |
Target: 5'- cCGGUggccggcuaugcgaACUGgCCGGCCUGGaCAauccCGGCGa -3' miRNA: 3'- -GCCA--------------UGACaGGUCGGACCcGU----GCCGC- -5' |
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26845 | 3' | -60.2 | NC_005809.1 | + | 37182 | 0.67 | 0.314173 |
Target: 5'- aGGUGCUcgcggcgcgcaCCAGugacauaacCCUGGGCGCGGUGc -3' miRNA: 3'- gCCAUGAca---------GGUC---------GGACCCGUGCCGC- -5' |
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26845 | 3' | -60.2 | NC_005809.1 | + | 21727 | 0.68 | 0.279169 |
Target: 5'- gCGGUACggaugCCA-CCguUGGGCGCGGCc -3' miRNA: 3'- -GCCAUGaca--GGUcGG--ACCCGUGCCGc -5' |
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26845 | 3' | -60.2 | NC_005809.1 | + | 41754 | 0.69 | 0.252428 |
Target: 5'- uGGccgAC-GUUCGGCaagggCUGGGCGCGGCGc -3' miRNA: 3'- gCCa--UGaCAGGUCG-----GACCCGUGCCGC- -5' |
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26845 | 3' | -60.2 | NC_005809.1 | + | 29823 | 0.7 | 0.227832 |
Target: 5'- aGGaGCgcgCCAagcGUCUGGGCGCGGCa -3' miRNA: 3'- gCCaUGacaGGU---CGGACCCGUGCCGc -5' |
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26845 | 3' | -60.2 | NC_005809.1 | + | 29660 | 0.7 | 0.216312 |
Target: 5'- aGGUAgccgUUGcCCAGCa-GGGCGCGGCc -3' miRNA: 3'- gCCAU----GACaGGUCGgaCCCGUGCCGc -5' |
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26845 | 3' | -60.2 | NC_005809.1 | + | 12976 | 0.71 | 0.194765 |
Target: 5'- uGGacaACUGgcaaaCCGcgcGCCUGGGCGCGGCc -3' miRNA: 3'- gCCa--UGACa----GGU---CGGACCCGUGCCGc -5' |
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26845 | 3' | -60.2 | NC_005809.1 | + | 41268 | 0.71 | 0.170492 |
Target: 5'- uGGUgGCcGUCgc-CCUGGGCGCGGCGg -3' miRNA: 3'- gCCA-UGaCAGgucGGACCCGUGCCGC- -5' |
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26845 | 3' | -60.2 | NC_005809.1 | + | 7604 | 0.72 | 0.161999 |
Target: 5'- gGGU-CUGUCCGucuGCCguggugauggucaggGGGCGCGGCu -3' miRNA: 3'- gCCAuGACAGGU---CGGa--------------CCCGUGCCGc -5' |
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26845 | 3' | -60.2 | NC_005809.1 | + | 10188 | 0.72 | 0.144961 |
Target: 5'- uCGGUGCUGgcuUCCugcugggcGGCCgGGGCcucgGCGGCGa -3' miRNA: 3'- -GCCAUGAC---AGG--------UCGGaCCCG----UGCCGC- -5' |
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26845 | 3' | -60.2 | NC_005809.1 | + | 32929 | 0.76 | 0.074263 |
Target: 5'- aCGGcUGCUGUUCGGCCaGGGCgaccACGGCu -3' miRNA: 3'- -GCC-AUGACAGGUCGGaCCCG----UGCCGc -5' |
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26845 | 3' | -60.2 | NC_005809.1 | + | 30642 | 1.09 | 0.000245 |
Target: 5'- uCGGUACUGUCCAGCCUGGGCACGGCGg -3' miRNA: 3'- -GCCAUGACAGGUCGGACCCGUGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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