miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26847 3' -59.2 NC_005809.1 + 12434 0.66 0.435373
Target:  5'- uCCGACGCgGugcAGGcCG-GCGGCguguucuggcgcgGCCUCa -3'
miRNA:   3'- -GGCUGCGgC---UCCaGCuCGUCG-------------UGGAG- -5'
26847 3' -59.2 NC_005809.1 + 13119 0.68 0.355729
Target:  5'- uCCGGguUGCCGgccaggcguGGGUCGuucuGCAacuGCGCCUCg -3'
miRNA:   3'- -GGCU--GCGGC---------UCCAGCu---CGU---CGUGGAG- -5'
26847 3' -59.2 NC_005809.1 + 13737 0.67 0.399196
Target:  5'- gCCGAgGCauAGGUCGGGUuguuuuguuccAGCGCCg- -3'
miRNA:   3'- -GGCUgCGgcUCCAGCUCG-----------UCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 13902 0.66 0.430629
Target:  5'- aUGGCGUCGGGGUuguuccaguucagggCGAugucgcGCAGCGCCg- -3'
miRNA:   3'- gGCUGCGGCUCCA---------------GCU------CGUCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 14030 0.74 0.12993
Target:  5'- gCCGGCgGCCGcaAGGUCGugccguucaacaAGCAGCGCCg- -3'
miRNA:   3'- -GGCUG-CGGC--UCCAGC------------UCGUCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 14061 0.67 0.390234
Target:  5'- cCCGGCGCUGGGcGUCGuuGCcuagGGUGCCa- -3'
miRNA:   3'- -GGCUGCGGCUC-CAGCu-CG----UCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 14261 0.68 0.354061
Target:  5'- uCCGACGCCGAGcGcgcCGAGUucuucaaguucuGCGCCg- -3'
miRNA:   3'- -GGCUGCGGCUC-Ca--GCUCGu-----------CGUGGag -5'
26847 3' -59.2 NC_005809.1 + 14496 0.69 0.289047
Target:  5'- aCGACGCCGcGGccaccugcccgcuguUCGAGCAG-ACCgUCg -3'
miRNA:   3'- gGCUGCGGCuCC---------------AGCUCGUCgUGG-AG- -5'
26847 3' -59.2 NC_005809.1 + 14553 0.68 0.3393
Target:  5'- gCGACGCCGAcauGaUCGGcuucuucCAGCGCCUCa -3'
miRNA:   3'- gGCUGCGGCU---CcAGCUc------GUCGUGGAG- -5'
26847 3' -59.2 NC_005809.1 + 14747 0.67 0.390235
Target:  5'- gCCGGCGCCaccg-CGGGCAGCGCg-- -3'
miRNA:   3'- -GGCUGCGGcuccaGCUCGUCGUGgag -5'
26847 3' -59.2 NC_005809.1 + 14841 0.66 0.426856
Target:  5'- gUCGAUGCCGuuGG-CGGcCAGCGCCg- -3'
miRNA:   3'- -GGCUGCGGCu-CCaGCUcGUCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 15075 0.69 0.308116
Target:  5'- gCUGGCgGCCGAGGcCGc-CGGCAuCCUCg -3'
miRNA:   3'- -GGCUG-CGGCUCCaGCucGUCGU-GGAG- -5'
26847 3' -59.2 NC_005809.1 + 16066 0.66 0.465439
Target:  5'- aCGugGCCGccG-CGcGCGGCGCCg- -3'
miRNA:   3'- gGCugCGGCucCaGCuCGUCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 16119 0.8 0.05426
Target:  5'- aCgGAUGCCGAGGUCGAGC-GCAUC-Cg -3'
miRNA:   3'- -GgCUGCGGCUCCAGCUCGuCGUGGaG- -5'
26847 3' -59.2 NC_005809.1 + 16930 0.67 0.416582
Target:  5'- gCCGGCagaacucGCCGAGGUgGAcGCgcugcuGGCGCCg- -3'
miRNA:   3'- -GGCUG-------CGGCUCCAgCU-CG------UCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 17017 0.67 0.398294
Target:  5'- uCCGACGCCGAcaucaucggcuacGGgggCGcugccGGCGGCggcaaaaccgACCUCa -3'
miRNA:   3'- -GGCUGCGGCU-------------CCa--GC-----UCGUCG----------UGGAG- -5'
26847 3' -59.2 NC_005809.1 + 18133 0.72 0.199969
Target:  5'- aUGuCGCCGAGGccgCGcGCGGCACCg- -3'
miRNA:   3'- gGCuGCGGCUCCa--GCuCGUCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 18369 0.7 0.252428
Target:  5'- gCCGGCGgCGAGGUUG-GCcuugccgauGGCGCCg- -3'
miRNA:   3'- -GGCUGCgGCUCCAGCuCG---------UCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 19366 0.66 0.426856
Target:  5'- uUGcCGuuGAGGUCGGcCAGgGCCUUg -3'
miRNA:   3'- gGCuGCggCUCCAGCUcGUCgUGGAG- -5'
26847 3' -59.2 NC_005809.1 + 19491 0.68 0.364151
Target:  5'- uUGGCGUCGGGG-CGAGCAuGUACaugUCg -3'
miRNA:   3'- gGCUGCGGCUCCaGCUCGU-CGUGg--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.