miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26847 3' -59.2 NC_005809.1 + 16930 0.67 0.416582
Target:  5'- gCCGGCagaacucGCCGAGGUgGAcGCgcugcuGGCGCCg- -3'
miRNA:   3'- -GGCUG-------CGGCUCCAgCU-CG------UCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 25516 0.67 0.41473
Target:  5'- cCCG-CGauGAGGUCGguuuugccgccgccGGCAGCGCCc- -3'
miRNA:   3'- -GGCuGCggCUCCAGC--------------UCGUCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 35026 0.67 0.408289
Target:  5'- gUGGCGCCGcAGaUCGAGCA-CGCCg- -3'
miRNA:   3'- gGCUGCGGC-UCcAGCUCGUcGUGGag -5'
26847 3' -59.2 NC_005809.1 + 13737 0.67 0.399196
Target:  5'- gCCGAgGCauAGGUCGGGUuguuuuguuccAGCGCCg- -3'
miRNA:   3'- -GGCUgCGgcUCCAGCUCG-----------UCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 17017 0.67 0.398294
Target:  5'- uCCGACGCCGAcaucaucggcuacGGgggCGcugccGGCGGCggcaaaaccgACCUCa -3'
miRNA:   3'- -GGCUGCGGCU-------------CCa--GC-----UCGUCG----------UGGAG- -5'
26847 3' -59.2 NC_005809.1 + 6371 0.67 0.390235
Target:  5'- -gGGCGCUGgguuacaccAGGUCGGccgccGCGGCGcCCUCg -3'
miRNA:   3'- ggCUGCGGC---------UCCAGCU-----CGUCGU-GGAG- -5'
26847 3' -59.2 NC_005809.1 + 14747 0.67 0.390235
Target:  5'- gCCGGCGCCaccg-CGGGCAGCGCg-- -3'
miRNA:   3'- -GGCUGCGGcuccaGCUCGUCGUGgag -5'
26847 3' -59.2 NC_005809.1 + 8555 0.67 0.390235
Target:  5'- gCCG-CGCCGAuGG-CGGGCAGCGa--- -3'
miRNA:   3'- -GGCuGCGGCU-CCaGCUCGUCGUggag -5'
26847 3' -59.2 NC_005809.1 + 14061 0.67 0.390234
Target:  5'- cCCGGCGCUGGGcGUCGuuGCcuagGGUGCCa- -3'
miRNA:   3'- -GGCUGCGGCUC-CAGCu-CG----UCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 30426 0.67 0.390234
Target:  5'- aUGGCGauGAGcG-CGGGCAGgGCCUCg -3'
miRNA:   3'- gGCUGCggCUC-CaGCUCGUCgUGGAG- -5'
26847 3' -59.2 NC_005809.1 + 29087 0.67 0.390234
Target:  5'- uCgGGCGCCGAGGUCaggcccguGCGGgACUUg -3'
miRNA:   3'- -GgCUGCGGCUCCAGcu------CGUCgUGGAg -5'
26847 3' -59.2 NC_005809.1 + 636 0.67 0.381405
Target:  5'- aCGGCGuCCGGcGUCGAGuCGGUGCC-Ca -3'
miRNA:   3'- gGCUGC-GGCUcCAGCUC-GUCGUGGaG- -5'
26847 3' -59.2 NC_005809.1 + 28127 0.67 0.381405
Target:  5'- gCGguACGCCu-GGUCGGGCGGCAgCa- -3'
miRNA:   3'- gGC--UGCGGcuCCAGCUCGUCGUgGag -5'
26847 3' -59.2 NC_005809.1 + 2052 0.67 0.37271
Target:  5'- aCGGCGCgcaauuccuCGGGGUCGucgccCAGCACCa- -3'
miRNA:   3'- gGCUGCG---------GCUCCAGCuc---GUCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 28397 0.67 0.37271
Target:  5'- uUCGACGCCGg---CGGcGCGGCGCCa- -3'
miRNA:   3'- -GGCUGCGGCuccaGCU-CGUCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 2647 0.67 0.37271
Target:  5'- uCCGGCGCuugccgugCGAGGUCuuGCGGUACgcaUCg -3'
miRNA:   3'- -GGCUGCG--------GCUCCAGcuCGUCGUGg--AG- -5'
26847 3' -59.2 NC_005809.1 + 19491 0.68 0.364151
Target:  5'- uUGGCGUCGGGG-CGAGCAuGUACaugUCg -3'
miRNA:   3'- gGCUGCGGCUCCaGCUCGU-CGUGg--AG- -5'
26847 3' -59.2 NC_005809.1 + 597 0.68 0.364151
Target:  5'- uUGAUgGCCGccugcGGGUCGgccAGCAGCGCCg- -3'
miRNA:   3'- gGCUG-CGGC-----UCCAGC---UCGUCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 8786 0.68 0.355729
Target:  5'- gCGGCGCaCGAugGGUCG-GCcGCGCCg- -3'
miRNA:   3'- gGCUGCG-GCU--CCAGCuCGuCGUGGag -5'
26847 3' -59.2 NC_005809.1 + 30280 0.68 0.355729
Target:  5'- gCGAguCGCCGGaaaacGUCGGGUAGCGCCc- -3'
miRNA:   3'- gGCU--GCGGCUc----CAGCUCGUCGUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.