miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26849 3' -60.1 NC_005809.1 + 4166 0.73 0.134025
Target:  5'- -cUUGCGCGcCGUGGucgAGGUguagccagUGGGCGCCg -3'
miRNA:   3'- cuAACGCGC-GCACC---UCCG--------GCUCGCGG- -5'
26849 3' -60.1 NC_005809.1 + 4503 0.66 0.410598
Target:  5'- --aUGCGCGCGgcgccacAGGCgcuUGAGCGCa -3'
miRNA:   3'- cuaACGCGCGCacc----UCCG---GCUCGCGg -5'
26849 3' -60.1 NC_005809.1 + 5353 0.66 0.410598
Target:  5'- ---cGCGCuGCGUGGccGCCugcaccGCGCCc -3'
miRNA:   3'- cuaaCGCG-CGCACCucCGGcu----CGCGG- -5'
26849 3' -60.1 NC_005809.1 + 6274 0.69 0.253692
Target:  5'- --cUGCGCGC-UGGgcAGGCCGAacagGuCGCCc -3'
miRNA:   3'- cuaACGCGCGcACC--UCCGGCU----C-GCGG- -5'
26849 3' -60.1 NC_005809.1 + 6637 0.66 0.374792
Target:  5'- --cUGCGCGCGgacacguacaGGuuGCCGGGgaaGCCg -3'
miRNA:   3'- cuaACGCGCGCa---------CCucCGGCUCg--CGG- -5'
26849 3' -60.1 NC_005809.1 + 7151 0.68 0.286979
Target:  5'- --cUGCG-GCcUGGAugaccagGGCCGGGCGCUu -3'
miRNA:   3'- cuaACGCgCGcACCU-------CCGGCUCGCGG- -5'
26849 3' -60.1 NC_005809.1 + 8137 0.7 0.206235
Target:  5'- uGGUUGUGgGCGUGcGGGuGUCG-GCGCUg -3'
miRNA:   3'- -CUAACGCgCGCAC-CUC-CGGCuCGCGG- -5'
26849 3' -60.1 NC_005809.1 + 11172 0.69 0.253046
Target:  5'- cGUUGCGUGCGcUGGucGGCCGuggugauGGUGCg -3'
miRNA:   3'- cUAACGCGCGC-ACCu-CCGGC-------UCGCGg -5'
26849 3' -60.1 NC_005809.1 + 12683 0.66 0.392429
Target:  5'- ---gGCGCGUGUcGAGGCC---CGCCu -3'
miRNA:   3'- cuaaCGCGCGCAcCUCCGGcucGCGG- -5'
26849 3' -60.1 NC_005809.1 + 13295 0.74 0.12001
Target:  5'- cGAUUGCaGCGCGccGGGGCCG-GCGUUg -3'
miRNA:   3'- -CUAACG-CGCGCacCUCCGGCuCGCGG- -5'
26849 3' -60.1 NC_005809.1 + 13941 0.71 0.185516
Target:  5'- --cUGCGCGCGgaacuGGCCGGccucauccGCGCCg -3'
miRNA:   3'- cuaACGCGCGCaccu-CCGGCU--------CGCGG- -5'
26849 3' -60.1 NC_005809.1 + 14354 0.7 0.206235
Target:  5'- ----cCGCGCGUGGucgucggcguGGCCGAccuggacaagGCGCCg -3'
miRNA:   3'- cuaacGCGCGCACCu---------CCGGCU----------CGCGG- -5'
26849 3' -60.1 NC_005809.1 + 15418 0.69 0.241044
Target:  5'- cGcgUGCgGCGCGUGGGGGacuuCGAGUGa- -3'
miRNA:   3'- -CuaACG-CGCGCACCUCCg---GCUCGCgg -5'
26849 3' -60.1 NC_005809.1 + 16061 0.7 0.223063
Target:  5'- ---cGCGCaCGUGGccGCCGcgcgcGGCGCCg -3'
miRNA:   3'- cuaaCGCGcGCACCucCGGC-----UCGCGG- -5'
26849 3' -60.1 NC_005809.1 + 18841 0.68 0.309763
Target:  5'- -uUUGCGCGgcaUGUaGaAGGCCGGGCgGCCc -3'
miRNA:   3'- cuAACGCGC---GCAcC-UCCGGCUCG-CGG- -5'
26849 3' -60.1 NC_005809.1 + 19345 0.7 0.228926
Target:  5'- ---gGCGCG-GUcGGuGGCCGAG-GCCg -3'
miRNA:   3'- cuaaCGCGCgCA-CCuCCGGCUCgCGG- -5'
26849 3' -60.1 NC_005809.1 + 21986 0.66 0.383543
Target:  5'- gGAUUcGCGCaGCGUGcGGGUuuCGucGGCGCCu -3'
miRNA:   3'- -CUAA-CGCG-CGCACcUCCG--GC--UCGCGG- -5'
26849 3' -60.1 NC_005809.1 + 23895 0.68 0.273679
Target:  5'- ---gGCcCGCGUGGuguaacAGGCCGGGgGCg -3'
miRNA:   3'- cuaaCGcGCGCACC------UCCGGCUCgCGg -5'
26849 3' -60.1 NC_005809.1 + 24116 0.73 0.132923
Target:  5'- --aUGCGCGCGUaGGGgucguaguccagccGGCUGcGCGCCu -3'
miRNA:   3'- cuaACGCGCGCA-CCU--------------CCGGCuCGCGG- -5'
26849 3' -60.1 NC_005809.1 + 26239 0.68 0.287693
Target:  5'- -uUUGCGCGCGUcGccgaAGGCaCGGGCacccGCCg -3'
miRNA:   3'- cuAACGCGCGCAcC----UCCG-GCUCG----CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.