miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26850 3' -65.6 NC_005809.1 + 27502 0.66 0.208636
Target:  5'- cCGgCGGCCucGGcCGCCagcuucuCGGCGCGGu -3'
miRNA:   3'- uGCgGCCGGuuCCcGCGG-------GUCGCGCC- -5'
26850 3' -65.6 NC_005809.1 + 38641 0.67 0.18845
Target:  5'- uCGCUGGCUuucaaacucgcauGGGGGCGCggCCAuGCGUGa -3'
miRNA:   3'- uGCGGCCGG-------------UUCCCGCG--GGU-CGCGCc -5'
26850 3' -65.6 NC_005809.1 + 1303 0.67 0.188933
Target:  5'- cCGCCGcGCCcAGGGCgacggccaccagGCCgacaAGCGCGa -3'
miRNA:   3'- uGCGGC-CGGuUCCCG------------CGGg---UCGCGCc -5'
26850 3' -65.6 NC_005809.1 + 34941 0.67 0.188933
Target:  5'- cUGCaaGGCCAAGGccacGUGUCCGGCGCu- -3'
miRNA:   3'- uGCGg-CCGGUUCC----CGCGGGUCGCGcc -5'
26850 3' -65.6 NC_005809.1 + 10785 0.67 0.172217
Target:  5'- --uUCGGCCuGGGauugcauguacugcuGCGCCuCGGCGCGGc -3'
miRNA:   3'- ugcGGCCGGuUCC---------------CGCGG-GUCGCGCC- -5'
26850 3' -65.6 NC_005809.1 + 36220 0.67 0.174908
Target:  5'- aGCGCCccGGCCuucgggccGGGCGCUUuggcuGGgGCGGa -3'
miRNA:   3'- -UGCGG--CCGGuu------CCCGCGGG-----UCgCGCC- -5'
26850 3' -65.6 NC_005809.1 + 38187 0.67 0.184151
Target:  5'- gGC-CCGGCgCGAcGGCGCCUGGCuGCGc -3'
miRNA:   3'- -UGcGGCCG-GUUcCCGCGGGUCG-CGCc -5'
26850 3' -65.6 NC_005809.1 + 2720 0.67 0.188933
Target:  5'- cACGuuGGCCGgacgcuugAGcGCgGCCCGGCGCu- -3'
miRNA:   3'- -UGCggCCGGU--------UCcCG-CGGGUCGCGcc -5'
26850 3' -65.6 NC_005809.1 + 35939 0.67 0.179477
Target:  5'- cACuCCGGCCAAGcGCGCgaagCUGGCgGCGGa -3'
miRNA:   3'- -UGcGGCCGGUUCcCGCG----GGUCG-CGCC- -5'
26850 3' -65.6 NC_005809.1 + 37784 0.67 0.188933
Target:  5'- aGCGCCaGCCGGcgugcuGGGCGC--AGUGUGGg -3'
miRNA:   3'- -UGCGGcCGGUU------CCCGCGggUCGCGCC- -5'
26850 3' -65.6 NC_005809.1 + 4562 0.67 0.188933
Target:  5'- -gGCCGaagucGCCGAGGcGCuGCUCGGUGCGc -3'
miRNA:   3'- ugCGGC-----CGGUUCC-CG-CGGGUCGCGCc -5'
26850 3' -65.6 NC_005809.1 + 27120 0.67 0.182738
Target:  5'- aGCuUCGGCCAAGGGCGCgUcaagaacaucaacaAGCuGUGGu -3'
miRNA:   3'- -UGcGGCCGGUUCCCGCGgG--------------UCG-CGCC- -5'
26850 3' -65.6 NC_005809.1 + 38855 0.67 0.166081
Target:  5'- gGCGUgaaCGGCac-GGGCGCCacgAGCGCGu -3'
miRNA:   3'- -UGCG---GCCGguuCCCGCGGg--UCGCGCc -5'
26850 3' -65.6 NC_005809.1 + 18475 0.67 0.170443
Target:  5'- cGCGCauGUagcGGGGUGCCCGugccccGCGCGGu -3'
miRNA:   3'- -UGCGgcCGgu-UCCCGCGGGU------CGCGCC- -5'
26850 3' -65.6 NC_005809.1 + 37881 0.67 0.170443
Target:  5'- uUGCCGGCCAuucucgccGCGCuauCCGGCGCGc -3'
miRNA:   3'- uGCGGCCGGUucc-----CGCG---GGUCGCGCc -5'
26850 3' -65.6 NC_005809.1 + 12437 0.67 0.179477
Target:  5'- gACGCggugcaGGCCGGcGGCGUguuCUGGCGCGGc -3'
miRNA:   3'- -UGCGg-----CCGGUUcCCGCG---GGUCGCGCC- -5'
26850 3' -65.6 NC_005809.1 + 39091 0.67 0.179477
Target:  5'- aACGCCGGgccgucgaacuCCAgcgcgaacaucGGGGCGCgCGGCGUc- -3'
miRNA:   3'- -UGCGGCC-----------GGU-----------UCCCGCGgGUCGCGcc -5'
26850 3' -65.6 NC_005809.1 + 35337 0.67 0.184151
Target:  5'- -gGCCGacaucGCCGAGGGUgaGCgCGGCGCa- -3'
miRNA:   3'- ugCGGC-----CGGUUCCCG--CGgGUCGCGcc -5'
26850 3' -65.6 NC_005809.1 + 31293 0.67 0.184151
Target:  5'- cCGCCuaccuGGCCGAGcgucccaGCGCCgCAGCGCa- -3'
miRNA:   3'- uGCGG-----CCGGUUCc------CGCGG-GUCGCGcc -5'
26850 3' -65.6 NC_005809.1 + 42174 0.67 0.184151
Target:  5'- cCGCCGuGCUgcugguGGGCGCCCuGgGCa- -3'
miRNA:   3'- uGCGGC-CGGuu----CCCGCGGGuCgCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.