miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26850 3' -65.6 NC_005809.1 + 10785 0.67 0.172217
Target:  5'- --uUCGGCCuGGGauugcauguacugcuGCGCCuCGGCGCGGc -3'
miRNA:   3'- ugcGGCCGGuUCC---------------CGCGG-GUCGCGCC- -5'
26850 3' -65.6 NC_005809.1 + 18475 0.67 0.170443
Target:  5'- cGCGCauGUagcGGGGUGCCCGugccccGCGCGGu -3'
miRNA:   3'- -UGCGgcCGgu-UCCCGCGGGU------CGCGCC- -5'
26850 3' -65.6 NC_005809.1 + 37881 0.67 0.170443
Target:  5'- uUGCCGGCCAuucucgccGCGCuauCCGGCGCGc -3'
miRNA:   3'- uGCGGCCGGUucc-----CGCG---GGUCGCGCc -5'
26850 3' -65.6 NC_005809.1 + 18829 0.67 0.166081
Target:  5'- gGCGCCGGCau--GGCGCUgCuGCGCGc -3'
miRNA:   3'- -UGCGGCCGguucCCGCGG-GuCGCGCc -5'
26850 3' -65.6 NC_005809.1 + 38855 0.67 0.166081
Target:  5'- gGCGUgaaCGGCac-GGGCGCCacgAGCGCGu -3'
miRNA:   3'- -UGCG---GCCGguuCCCGCGGg--UCGCGCc -5'
26850 3' -65.6 NC_005809.1 + 4040 0.68 0.157655
Target:  5'- -aGCCGGCCGcggcgAGcGGCaggccagcgGCCCAGgGgGGa -3'
miRNA:   3'- ugCGGCCGGU-----UC-CCG---------CGGGUCgCgCC- -5'
26850 3' -65.6 NC_005809.1 + 21333 0.68 0.157655
Target:  5'- gAUGCCGGCCAcc-GCGCCCAGguUGCc- -3'
miRNA:   3'- -UGCGGCCGGUuccCGCGGGUC--GCGcc -5'
26850 3' -65.6 NC_005809.1 + 4094 0.68 0.157655
Target:  5'- -gGCCGGCCAGGugggcGGCGCUgAauucGuCGCGGu -3'
miRNA:   3'- ugCGGCCGGUUC-----CCGCGGgU----C-GCGCC- -5'
26850 3' -65.6 NC_005809.1 + 12953 0.68 0.153588
Target:  5'- aGC-CCGGCCAcaaGCGCCCGGCcUGGa -3'
miRNA:   3'- -UGcGGCCGGUuccCGCGGGUCGcGCC- -5'
26850 3' -65.6 NC_005809.1 + 18431 0.68 0.153588
Target:  5'- gGCGCUgGGCCA--GGCGCgCAGC-CGGc -3'
miRNA:   3'- -UGCGG-CCGGUucCCGCGgGUCGcGCC- -5'
26850 3' -65.6 NC_005809.1 + 36407 0.68 0.149617
Target:  5'- -gGCCcGCUAAGGGUGCCC-GUGCc- -3'
miRNA:   3'- ugCGGcCGGUUCCCGCGGGuCGCGcc -5'
26850 3' -65.6 NC_005809.1 + 12007 0.68 0.14574
Target:  5'- cACGUCGGCCAGcagcgcggccGuGGCcggcgaggucuuGCCCAGCGUGu -3'
miRNA:   3'- -UGCGGCCGGUU----------C-CCG------------CGGGUCGCGCc -5'
26850 3' -65.6 NC_005809.1 + 24646 0.68 0.141954
Target:  5'- gUGCCGGCgGgccAGGaugguguugucGCGCCCGcCGCGGg -3'
miRNA:   3'- uGCGGCCGgU---UCC-----------CGCGGGUcGCGCC- -5'
26850 3' -65.6 NC_005809.1 + 40334 0.69 0.134652
Target:  5'- cUGCCGGCCAAG---GCCCGGCGUu- -3'
miRNA:   3'- uGCGGCCGGUUCccgCGGGUCGCGcc -5'
26850 3' -65.6 NC_005809.1 + 33568 0.69 0.134652
Target:  5'- uGCGCC-GCCugcuGGaaGCGCCCccGCGCGGc -3'
miRNA:   3'- -UGCGGcCGGuu--CC--CGCGGGu-CGCGCC- -5'
26850 3' -65.6 NC_005809.1 + 19027 0.69 0.134296
Target:  5'- gAUGUCGGCCGAGGccaucgaccgcguGCGCCgccuggaaGGCGCGc -3'
miRNA:   3'- -UGCGGCCGGUUCC-------------CGCGGg-------UCGCGCc -5'
26850 3' -65.6 NC_005809.1 + 18898 0.69 0.131132
Target:  5'- gUGuCCGGCCcgaccGAGGGuCGCCUGGUGCa- -3'
miRNA:   3'- uGC-GGCCGG-----UUCCC-GCGGGUCGCGcc -5'
26850 3' -65.6 NC_005809.1 + 22364 0.69 0.131132
Target:  5'- -aGCCGGCCGcGGGCGCugccaagaCCgAGgGCGa -3'
miRNA:   3'- ugCGGCCGGUuCCCGCG--------GG-UCgCGCc -5'
26850 3' -65.6 NC_005809.1 + 4430 0.69 0.131132
Target:  5'- gUGCCGcGCCAGGGGgaaGCCgcCAGCgGUGGc -3'
miRNA:   3'- uGCGGC-CGGUUCCCg--CGG--GUCG-CGCC- -5'
26850 3' -65.6 NC_005809.1 + 2850 0.69 0.128719
Target:  5'- gGCGCCagcaccagcgaggGGCCugguucgaccaguucGAGGaUGUCCAGCGCGGu -3'
miRNA:   3'- -UGCGG-------------CCGG---------------UUCCcGCGGGUCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.