Results 1 - 20 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26850 | 3' | -65.6 | NC_005809.1 | + | 29390 | 1.08 | 0.000096 |
Target: 5'- aACGCCGGCCAAGGGCGCCCAGCGCGGc -3' miRNA: 3'- -UGCGGCCGGUUCCCGCGGGUCGCGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 1887 | 0.77 | 0.029759 |
Target: 5'- gGCGCUGGCCGgguGGGCGaaCAGCaGCGGg -3' miRNA: 3'- -UGCGGCCGGUu--CCCGCggGUCG-CGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 9392 | 0.77 | 0.030605 |
Target: 5'- -gGCCGuGCCGAGGGCGCCCAcuucCGCa- -3' miRNA: 3'- ugCGGC-CGGUUCCCGCGGGUc---GCGcc -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 10543 | 0.75 | 0.044008 |
Target: 5'- cGCGCCGGguUCAAugucguGGGCGUCCAGCGUGu -3' miRNA: 3'- -UGCGGCC--GGUU------CCCGCGGGUCGCGCc -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 1722 | 0.75 | 0.046526 |
Target: 5'- gUGCCGG-CGAGGGCGUCCAaguccuCGCGGg -3' miRNA: 3'- uGCGGCCgGUUCCCGCGGGUc-----GCGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 24576 | 0.74 | 0.049184 |
Target: 5'- -gGCCGGCCAcggucGGGcCGUCCGGCGUGu -3' miRNA: 3'- ugCGGCCGGUu----CCC-GCGGGUCGCGCc -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 35157 | 0.73 | 0.058075 |
Target: 5'- -gGCCGGCCAuccGGUGCCCGGCuucaagcugGUGGa -3' miRNA: 3'- ugCGGCCGGUuc-CCGCGGGUCG---------CGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 27703 | 0.73 | 0.058075 |
Target: 5'- -aGCCGGgCAAcuuaaaGGCGCCCAGCGUGcGg -3' miRNA: 3'- ugCGGCCgGUUc-----CCGCGGGUCGCGC-C- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 15134 | 0.73 | 0.058075 |
Target: 5'- aGCGCCagGGCCugcGGcCGCCgGGCGCGGu -3' miRNA: 3'- -UGCGG--CCGGuucCC-GCGGgUCGCGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 5101 | 0.73 | 0.061372 |
Target: 5'- -gGCCGGCCca--GCGUCCGGUGCGGc -3' miRNA: 3'- ugCGGCCGGuuccCGCGGGUCGCGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 13174 | 0.73 | 0.064849 |
Target: 5'- gUGUCGGCCGcgcuGGGCGCCCuuGGC-CGGc -3' miRNA: 3'- uGCGGCCGGUu---CCCGCGGG--UCGcGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 23435 | 0.72 | 0.069463 |
Target: 5'- gACGCCGGCCGGGaugcggaugguucGCGCguacacgCCGGCGUGGa -3' miRNA: 3'- -UGCGGCCGGUUCc------------CGCG-------GGUCGCGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 4016 | 0.72 | 0.070423 |
Target: 5'- cGCGCCGGCCAccaGCGUCaugccGCGCGGg -3' miRNA: 3'- -UGCGGCCGGUuccCGCGGgu---CGCGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 1763 | 0.72 | 0.070423 |
Target: 5'- -gGCCGGCCu---GCGCCUGGCGCGu -3' miRNA: 3'- ugCGGCCGGuuccCGCGGGUCGCGCc -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 4863 | 0.72 | 0.072382 |
Target: 5'- uGC-CCGGUCAGGucguUGCCCAGCGCGGc -3' miRNA: 3'- -UGcGGCCGGUUCcc--GCGGGUCGCGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 31192 | 0.72 | 0.073582 |
Target: 5'- cGCGCacguucugccugaCGGUCGAGGGCGaaagcaugaagaacCCCGGCGCGcGg -3' miRNA: 3'- -UGCG-------------GCCGGUUCCCGC--------------GGGUCGCGC-C- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 17020 | 0.72 | 0.078576 |
Target: 5'- gACGCCgacaucaucGGCUAcgGGGGCGCugCCGGCgGCGGc -3' miRNA: 3'- -UGCGG---------CCGGU--UCCCGCG--GGUCG-CGCC- -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 7909 | 0.71 | 0.080751 |
Target: 5'- uUGCCucccaucuuGCCGAGGGCGaacaCCGGCGCGa -3' miRNA: 3'- uGCGGc--------CGGUUCCCGCg---GGUCGCGCc -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 21855 | 0.71 | 0.082983 |
Target: 5'- cAUGUCGGCCugauGGGGUGCCC-GUGCc- -3' miRNA: 3'- -UGCGGCCGGu---UCCCGCGGGuCGCGcc -5' |
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26850 | 3' | -65.6 | NC_005809.1 | + | 23698 | 0.71 | 0.087627 |
Target: 5'- cACGUacaGGCCGGuaGCGCCCAGguCGCGGg -3' miRNA: 3'- -UGCGg--CCGGUUccCGCGGGUC--GCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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