Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26850 | 5' | -55.8 | NC_005809.1 | + | 6371 | 0.67 | 0.519014 |
Target: 5'- cGGCCcACGUCGgcaaucAGGCGCAGgccgGCcGGc -3' miRNA: 3'- -CCGGcUGUAGC------UCCGCGUCaa--CGuCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 10437 | 0.67 | 0.515808 |
Target: 5'- cGGCCuugagggauucgggGGCGUCGAGGUcgGCAGcgGcCAGGg -3' miRNA: 3'- -CCGG--------------CUGUAGCUCCG--CGUCaaC-GUCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 22643 | 0.68 | 0.50836 |
Target: 5'- cGGCCGACAaggaguUCGGcGGCGacaAGcUGCAaGAa -3' miRNA: 3'- -CCGGCUGU------AGCU-CCGCg--UCaACGU-CU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 29263 | 0.68 | 0.50836 |
Target: 5'- aGGCCGGCcgguGUCGGGGUGgAcGUgGUAGGc -3' miRNA: 3'- -CCGGCUG----UAGCUCCGCgU-CAaCGUCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 16595 | 0.68 | 0.486297 |
Target: 5'- aGGCCGACcacgCGAugguguuGGCGCcgccGUUGguGAa -3' miRNA: 3'- -CCGGCUGua--GCU-------CCGCGu---CAACguCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 17022 | 0.68 | 0.476981 |
Target: 5'- cGCCGACAUCaucggcuacgGGGGCGCuGccgGCGGc -3' miRNA: 3'- cCGGCUGUAG----------CUCCGCGuCaa-CGUCu -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 34399 | 0.68 | 0.476981 |
Target: 5'- cGCCGGCAgcaUCcGGGCGCAcgcGCAGGg -3' miRNA: 3'- cCGGCUGU---AGcUCCGCGUcaaCGUCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 1329 | 0.68 | 0.456603 |
Target: 5'- aGGCCGACAagcgCGAGGaagcCGUGGUcgGCGGc -3' miRNA: 3'- -CCGGCUGUa---GCUCC----GCGUCAa-CGUCu -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 10108 | 0.69 | 0.446591 |
Target: 5'- cGGCCGcccccaccucgGCAguagGGGGCGUAGggGCAGu -3' miRNA: 3'- -CCGGC-----------UGUag--CUCCGCGUCaaCGUCu -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 39306 | 0.69 | 0.436702 |
Target: 5'- gGGCCGACuAUCu-GGCGCGGaaGCuGAa -3' miRNA: 3'- -CCGGCUG-UAGcuCCGCGUCaaCGuCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 18903 | 0.69 | 0.436702 |
Target: 5'- cGGcCCGACcgaggGUCGccuGGUGCAGUUGCu-- -3' miRNA: 3'- -CC-GGCUG-----UAGCu--CCGCGUCAACGucu -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 29044 | 0.69 | 0.41731 |
Target: 5'- cGGCCGACAguucGGCGCGGacgGCAa- -3' miRNA: 3'- -CCGGCUGUagcuCCGCGUCaa-CGUcu -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 24308 | 0.69 | 0.41731 |
Target: 5'- cGGCCGGCAaguUCucGGCGCAGgucgUgaccggcauccaGCAGAa -3' miRNA: 3'- -CCGGCUGU---AGcuCCGCGUCa---A------------CGUCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 33391 | 0.7 | 0.37121 |
Target: 5'- aGGCCaACGUCGAcGGCGCcaAGUUGUc-- -3' miRNA: 3'- -CCGGcUGUAGCU-CCGCG--UCAACGucu -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 2436 | 0.7 | 0.362417 |
Target: 5'- aGGCCGGCcUCGAagaucGGCGCcacgauGUUGCAc- -3' miRNA: 3'- -CCGGCUGuAGCU-----CCGCGu-----CAACGUcu -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 35324 | 0.7 | 0.353768 |
Target: 5'- aGGCCggcGACAUCGGcccGCGCcaguggccgaAGUUGCAGGg -3' miRNA: 3'- -CCGG---CUGUAGCUc--CGCG----------UCAACGUCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 27864 | 0.7 | 0.353768 |
Target: 5'- gGGCgcagGGCAUgGAGGCGCAacUGCAGGc -3' miRNA: 3'- -CCGg---CUGUAgCUCCGCGUcaACGUCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 11600 | 0.71 | 0.328708 |
Target: 5'- cGGCUGGCcgCcGGGCaGCAGUgccaGCGGAa -3' miRNA: 3'- -CCGGCUGuaGcUCCG-CGUCAa---CGUCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 37790 | 0.71 | 0.320652 |
Target: 5'- aGCCGGCGUgCuGGGCGCAG-UGUGGGc -3' miRNA: 3'- cCGGCUGUA-GcUCCGCGUCaACGUCU- -5' |
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26850 | 5' | -55.8 | NC_005809.1 | + | 4172 | 0.74 | 0.223252 |
Target: 5'- cGCCGugGUCGAGGUGUAGccaGUGGGc -3' miRNA: 3'- cCGGCugUAGCUCCGCGUCaa-CGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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