Results 1 - 20 of 264 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26851 | 3' | -59.7 | NC_005809.1 | + | 29259 | 1.1 | 0.000217 |
Target: 5'- aAGCCUACGCCGCCUACAACGCCGGCCc -3' miRNA: 3'- -UCGGAUGCGGCGGAUGUUGCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 670 | 0.87 | 0.012449 |
Target: 5'- uAGCCaccAgGCCGCCUACGgcgGCGCCGGCCg -3' miRNA: 3'- -UCGGa--UgCGGCGGAUGU---UGCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 11146 | 0.82 | 0.032739 |
Target: 5'- cGGCCUGCugcuggGCCGCCUGCGcacguugcguGCGCUGGUCg -3' miRNA: 3'- -UCGGAUG------CGGCGGAUGU----------UGCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 33996 | 0.79 | 0.052058 |
Target: 5'- aGGCCgcacGCGCgGCCUACGACGCCcaggaugaGGUCg -3' miRNA: 3'- -UCGGa---UGCGgCGGAUGUUGCGG--------CCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 34819 | 0.79 | 0.052058 |
Target: 5'- gAGCCUGgauuccuuCGUCGCCaACAGCaaGCCGGCCg -3' miRNA: 3'- -UCGGAU--------GCGGCGGaUGUUG--CGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 15141 | 0.78 | 0.060112 |
Target: 5'- gGGCCUGCgGCCGCCggGCGcgguGCGCCaGGCg -3' miRNA: 3'- -UCGGAUG-CGGCGGa-UGU----UGCGG-CCGg -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 27702 | 0.78 | 0.061156 |
Target: 5'- aAGCCgggcaacuuaaagGCGCCcaGCgUGCGGCGCUGGCCg -3' miRNA: 3'- -UCGGa------------UGCGG--CGgAUGUUGCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 27824 | 0.78 | 0.063661 |
Target: 5'- cGCgcGCGCUGCCcGCGgugGCGCCGGCCg -3' miRNA: 3'- uCGgaUGCGGCGGaUGU---UGCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 7223 | 0.77 | 0.067411 |
Target: 5'- cAGCauCUGCGCCGCgCUcacccucgGCGAUGUCGGCCg -3' miRNA: 3'- -UCG--GAUGCGGCG-GA--------UGUUGCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 23417 | 0.77 | 0.067411 |
Target: 5'- gAGC--GCGCCGgUcagUGCGACGCCGGCCg -3' miRNA: 3'- -UCGgaUGCGGCgG---AUGUUGCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 14985 | 0.77 | 0.071374 |
Target: 5'- cGCCaucugGCGCCGCCUGC--UGCCGGUg -3' miRNA: 3'- uCGGa----UGCGGCGGAUGuuGCGGCCGg -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 40341 | 0.77 | 0.071374 |
Target: 5'- cGGCCacGCGCCGCCUGCuGCGCgUGGUg -3' miRNA: 3'- -UCGGa-UGCGGCGGAUGuUGCG-GCCGg -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 25273 | 0.77 | 0.071374 |
Target: 5'- uGCCggaauggAUGCgCGCCcGCGGCGCCGGCUu -3' miRNA: 3'- uCGGa------UGCG-GCGGaUGUUGCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 41896 | 0.77 | 0.073438 |
Target: 5'- cGGCCgGCGCCGCCguaGGCGCCugguGGCUa -3' miRNA: 3'- -UCGGaUGCGGCGGaugUUGCGG----CCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 18461 | 0.77 | 0.077741 |
Target: 5'- cGGUC-GCGgCGCCgGCGGCGUCGGCCg -3' miRNA: 3'- -UCGGaUGCgGCGGaUGUUGCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 41469 | 0.76 | 0.082284 |
Target: 5'- aAGCCUuuGCCGCCUAC--CGCC-GCCa -3' miRNA: 3'- -UCGGAugCGGCGGAUGuuGCGGcCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 11578 | 0.76 | 0.089576 |
Target: 5'- aAGCC-AUGCCGCCcAgGGcCGCCGGCUg -3' miRNA: 3'- -UCGGaUGCGGCGGaUgUU-GCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 24903 | 0.76 | 0.09214 |
Target: 5'- cGCCUACGCCcaGCCcgcCGACGCCaucaagaucguGGCCg -3' miRNA: 3'- uCGGAUGCGG--CGGau-GUUGCGG-----------CCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 15321 | 0.75 | 0.094774 |
Target: 5'- uGCCUcgGCCaagaGCCUGgGGCGCCGGCUg -3' miRNA: 3'- uCGGAugCGG----CGGAUgUUGCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 34435 | 0.75 | 0.097479 |
Target: 5'- cGCCgacaccCGCaCGCCcACAaccaACGCCGGCCg -3' miRNA: 3'- uCGGau----GCG-GCGGaUGU----UGCGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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