Results 21 - 40 of 264 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26851 | 3' | -59.7 | NC_005809.1 | + | 31678 | 0.66 | 0.401672 |
Target: 5'- cGCCauuccgguggaggaaUACGCCGCgcGCAucGCGCCGaCCg -3' miRNA: 3'- uCGG---------------AUGCGGCGgaUGU--UGCGGCcGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 38768 | 0.66 | 0.398042 |
Target: 5'- cGCCUGC-CCaaCUACAacgaauuccagGCGCUGGCUu -3' miRNA: 3'- uCGGAUGcGGcgGAUGU-----------UGCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 6365 | 0.66 | 0.398042 |
Target: 5'- aGGCCgggGCGCUgGgUUACAccAgGUCGGCCg -3' miRNA: 3'- -UCGGa--UGCGG-CgGAUGU--UgCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 37006 | 0.66 | 0.398042 |
Target: 5'- cGGCCagcguugGCGCCGUCgauacCGugGCgGGCg -3' miRNA: 3'- -UCGGa------UGCGGCGGau---GUugCGgCCGg -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 10659 | 0.66 | 0.397138 |
Target: 5'- cGGCgUgaaacGCGCCGCCguguccaguUGCGucuugacggcagcGCGCaCGGCCu -3' miRNA: 3'- -UCGgA-----UGCGGCGG---------AUGU-------------UGCG-GCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 15080 | 0.66 | 0.392637 |
Target: 5'- cGGCCgAgGCCGCCggcauccucgcguggUGCGugcgcggcGCGCUGGCa -3' miRNA: 3'- -UCGGaUgCGGCGG---------------AUGU--------UGCGGCCGg -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 8366 | 0.66 | 0.38906 |
Target: 5'- -uCCUGCGCCGCCgcgcuCGAaucuucgagaauCGCCGcCCa -3' miRNA: 3'- ucGGAUGCGGCGGau---GUU------------GCGGCcGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 4354 | 0.66 | 0.388169 |
Target: 5'- uGGCCguUGCGuuGCCggUGCGcgugaagGCGaCGGCCg -3' miRNA: 3'- -UCGG--AUGCggCGG--AUGU-------UGCgGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 42368 | 0.66 | 0.388169 |
Target: 5'- -aCCUACGCCaCCaugaUGCugauggcggggauGACGCCGGCa -3' miRNA: 3'- ucGGAUGCGGcGG----AUG-------------UUGCGGCCGg -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 30353 | 0.67 | 0.383736 |
Target: 5'- uGCCggugUGCUGCgUcccgaccaggggcagGCAGCGCgGGCCg -3' miRNA: 3'- uCGGau--GCGGCGgA---------------UGUUGCGgCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 37885 | 0.67 | 0.380212 |
Target: 5'- cGGCCauucuCGCCGCgCUAUccggcGCGCUGGUg -3' miRNA: 3'- -UCGGau---GCGGCG-GAUGu----UGCGGCCGg -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 18142 | 0.67 | 0.380212 |
Target: 5'- aGGCCgcGCGCgGCaccgACAAaucggGCCGGCUg -3' miRNA: 3'- -UCGGa-UGCGgCGga--UGUUg----CGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 5298 | 0.67 | 0.380212 |
Target: 5'- cGGCC-ACGgCGUCgAUAuuuuccagguCGCCGGCCa -3' miRNA: 3'- -UCGGaUGCgGCGGaUGUu---------GCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 5560 | 0.67 | 0.380212 |
Target: 5'- cGCCacgguaucgACGgCGCC---AACGCUGGCCg -3' miRNA: 3'- uCGGa--------UGCgGCGGaugUUGCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 25324 | 0.67 | 0.380212 |
Target: 5'- cGGCgCU-CGUCGCCgggAUuguccAgGCCGGCCa -3' miRNA: 3'- -UCG-GAuGCGGCGGa--UGu----UgCGGCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 3884 | 0.67 | 0.380212 |
Target: 5'- aGGCC-GCGCUGCCgu---CGCC-GCCg -3' miRNA: 3'- -UCGGaUGCGGCGGauguuGCGGcCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 37144 | 0.67 | 0.380212 |
Target: 5'- cGCCcACGCCGCCauccGCGCCGuggaGCg -3' miRNA: 3'- uCGGaUGCGGCGGauguUGCGGC----CGg -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 8218 | 0.67 | 0.380212 |
Target: 5'- cGGCCaguucgUGCGCgGCCgUGCccuCGUCGGCg -3' miRNA: 3'- -UCGG------AUGCGgCGG-AUGuu-GCGGCCGg -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 20308 | 0.67 | 0.380212 |
Target: 5'- uGCUcgGCgGCCGgUUGCGAUGCgGGCUg -3' miRNA: 3'- uCGGa-UG-CGGCgGAUGUUGCGgCCGG- -5' |
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26851 | 3' | -59.7 | NC_005809.1 | + | 19742 | 0.67 | 0.380212 |
Target: 5'- uGCUUGgGCUGgUUGCcguuguUGCCGGCCa -3' miRNA: 3'- uCGGAUgCGGCgGAUGuu----GCGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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