miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26851 5' -51.2 NC_005809.1 + 15111 0.67 0.819829
Target:  5'- cGUGcgCGGCGCgcu-GGcauaccaGCGCCAGGGc -3'
miRNA:   3'- -CGUuaGCCGCGacuuUC-------UGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 18835 0.67 0.81107
Target:  5'- gGCA--UGGCGCUGcuGcGCGCCAccgAGGc -3'
miRNA:   3'- -CGUuaGCCGCGACuuUcUGCGGU---UCC- -5'
26851 5' -51.2 NC_005809.1 + 28816 0.67 0.81107
Target:  5'- cGCucauGUCGGCGCUGGAAcaaaacaacccGACcuauGCCucGGc -3'
miRNA:   3'- -CGu---UAGCCGCGACUUU-----------CUG----CGGuuCC- -5'
26851 5' -51.2 NC_005809.1 + 16084 0.67 0.795095
Target:  5'- uGCgAGUCGGCgaggaucacccgaauGCcaaacUGAcGGAUGCCGAGGu -3'
miRNA:   3'- -CG-UUAGCCG---------------CG-----ACUuUCUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 40503 0.67 0.791025
Target:  5'- aCAucgUGGUGCUGGgcGACGaccCCGAGGa -3'
miRNA:   3'- cGUua-GCCGCGACUuuCUGC---GGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 34560 0.67 0.791024
Target:  5'- ----cCGGCGaaGcu-GGCGCCAAGGg -3'
miRNA:   3'- cguuaGCCGCgaCuuuCUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 31872 0.67 0.790003
Target:  5'- aGCAAUCGGCcgaggccgugcgcGCUGccgucAAGACGCaacuGGa -3'
miRNA:   3'- -CGUUAGCCG-------------CGACu----UUCUGCGguu-CC- -5'
26851 5' -51.2 NC_005809.1 + 6264 0.68 0.780726
Target:  5'- gGCGuugucUCGGUGUguucgcuuUGGcuGGGGCGCCGGGGc -3'
miRNA:   3'- -CGUu----AGCCGCG--------ACU--UUCUGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 1465 0.68 0.780725
Target:  5'- cGCGGUCGGCGgccucCUGgcAG--GCCGGGGu -3'
miRNA:   3'- -CGUUAGCCGC-----GACuuUCugCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 23498 0.68 0.774465
Target:  5'- uGCAAucgcgugaccUCGGCgaggacacGCUGAucGACGCCGccggcggccgcuaccAGGg -3'
miRNA:   3'- -CGUU----------AGCCG--------CGACUuuCUGCGGU---------------UCC- -5'
26851 5' -51.2 NC_005809.1 + 8125 0.68 0.770259
Target:  5'- cGCGGcCGGCGUUGGuuguGGGCGUgcGGGu -3'
miRNA:   3'- -CGUUaGCCGCGACUu---UCUGCGguUCC- -5'
26851 5' -51.2 NC_005809.1 + 32717 0.68 0.770259
Target:  5'- uGCAAUCaGGCGaUGGAGggcuGACGCCAu-- -3'
miRNA:   3'- -CGUUAG-CCGCgACUUU----CUGCGGUucc -5'
26851 5' -51.2 NC_005809.1 + 18115 0.68 0.759637
Target:  5'- aGCAggucGUCGGCGUcaau-GuCGCCGAGGc -3'
miRNA:   3'- -CGU----UAGCCGCGacuuuCuGCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 33928 0.68 0.759637
Target:  5'- aGCGAUaCGGCGCggccuGGGGCGUUuccgAAGGg -3'
miRNA:   3'- -CGUUA-GCCGCGacu--UUCUGCGG----UUCC- -5'
26851 5' -51.2 NC_005809.1 + 15263 0.68 0.737981
Target:  5'- cGCGccuGUgGGCGUcgugGGAAGccuuCGCCAAGGc -3'
miRNA:   3'- -CGU---UAgCCGCGa---CUUUCu---GCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 32865 0.68 0.736884
Target:  5'- aCGGUCGGCGCcGAGAuugucGCGCCcgacuggAAGGa -3'
miRNA:   3'- cGUUAGCCGCGaCUUUc----UGCGG-------UUCC- -5'
26851 5' -51.2 NC_005809.1 + 10176 0.69 0.703534
Target:  5'- cGCGGcuuuuuuUCGGUGCUGGcuuccugcuGGGCGgCCGGGGc -3'
miRNA:   3'- -CGUU-------AGCCGCGACUu--------UCUGC-GGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 11270 0.7 0.670641
Target:  5'- cGCug-CGGCGCUG--GGACGCuCGgccAGGu -3'
miRNA:   3'- -CGuuaGCCGCGACuuUCUGCG-GU---UCC- -5'
26851 5' -51.2 NC_005809.1 + 38717 0.7 0.647745
Target:  5'- aGCGA-CGGCGcCUGGuacaacuuCGCCGAGGu -3'
miRNA:   3'- -CGUUaGCCGC-GACUuucu----GCGGUUCC- -5'
26851 5' -51.2 NC_005809.1 + 18065 0.7 0.636268
Target:  5'- cGUGAUCGGCGU----GGGCGCCAGc- -3'
miRNA:   3'- -CGUUAGCCGCGacuuUCUGCGGUUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.