miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26852 3' -56.3 NC_005809.1 + 25821 0.66 0.561112
Target:  5'- aUCuGCAccgggcCGCCGUuGGCGCCG-GUCa -3'
miRNA:   3'- aAGuUGUa-----GCGGCAcCCGUGGCuCAG- -5'
26852 3' -56.3 NC_005809.1 + 27421 0.66 0.528181
Target:  5'- aUCAGcCGUCGCCcUGGGCgcauccGCCGccagcauggGGUCg -3'
miRNA:   3'- aAGUU-GUAGCGGcACCCG------UGGC---------UCAG- -5'
26852 3' -56.3 NC_005809.1 + 36176 0.66 0.528181
Target:  5'- -aCGACAUCaCCGaGGGCGCCGcGg- -3'
miRNA:   3'- aaGUUGUAGcGGCaCCCGUGGCuCag -5'
26852 3' -56.3 NC_005809.1 + 1697 0.66 0.527095
Target:  5'- gUCGAgAaauUCGCCGUGGGCcggcguGCCGGcgagggcGUCc -3'
miRNA:   3'- aAGUUgU---AGCGGCACCCG------UGGCU-------CAG- -5'
26852 3' -56.3 NC_005809.1 + 13806 0.66 0.51736
Target:  5'- ---cGCGaCGCCGUGcGCGCCGAGa- -3'
miRNA:   3'- aaguUGUaGCGGCACcCGUGGCUCag -5'
26852 3' -56.3 NC_005809.1 + 30459 0.67 0.48546
Target:  5'- aUCA--GUUGCCaggGGGCGCCG-GUCa -3'
miRNA:   3'- aAGUugUAGCGGca-CCCGUGGCuCAG- -5'
26852 3' -56.3 NC_005809.1 + 35488 0.68 0.444456
Target:  5'- gUgGGCG-CGCCGUGGGUagGCCGcggcGUCa -3'
miRNA:   3'- aAgUUGUaGCGGCACCCG--UGGCu---CAG- -5'
26852 3' -56.3 NC_005809.1 + 4179 0.68 0.424694
Target:  5'- gUCGAgGUguaGCCaGUGGGCGCCGAaaaGUUg -3'
miRNA:   3'- aAGUUgUAg--CGG-CACCCGUGGCU---CAG- -5'
26852 3' -56.3 NC_005809.1 + 18064 0.68 0.424694
Target:  5'- -aCGugAUCGgCGUGGGCGCCa---- -3'
miRNA:   3'- aaGUugUAGCgGCACCCGUGGcucag -5'
26852 3' -56.3 NC_005809.1 + 12630 0.69 0.396061
Target:  5'- cUCGGCAUCGCUGcUGccguccuuuGGCGUCGGGUCg -3'
miRNA:   3'- aAGUUGUAGCGGC-AC---------CCGUGGCUCAG- -5'
26852 3' -56.3 NC_005809.1 + 619 0.7 0.317985
Target:  5'- -cCAGCAgCGCCGUGgacacggcguccGGCGUCGAGUCg -3'
miRNA:   3'- aaGUUGUaGCGGCAC------------CCGUGGCUCAG- -5'
26852 3' -56.3 NC_005809.1 + 27631 0.71 0.265672
Target:  5'- --gAGCAUCGCCGaguUGGGCGCgcAGUCg -3'
miRNA:   3'- aagUUGUAGCGGC---ACCCGUGgcUCAG- -5'
26852 3' -56.3 NC_005809.1 + 19471 0.74 0.172292
Target:  5'- -----uGUCGCCGUGGGCGCCGccGUUg -3'
miRNA:   3'- aaguugUAGCGGCACCCGUGGCu-CAG- -5'
26852 3' -56.3 NC_005809.1 + 29014 1.08 0.000594
Target:  5'- gUUCAACAUCGCCGUGGGCACCGAGUCa -3'
miRNA:   3'- -AAGUUGUAGCGGCACCCGUGGCUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.