miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26852 5' -56.5 NC_005809.1 + 5734 0.66 0.589497
Target:  5'- cACGGUUCGGCuaaGUuuguCGGCGAGuuGCu -3'
miRNA:   3'- -UGUCAAGCCG---CGccu-GCCGUUUggCG- -5'
26852 5' -56.5 NC_005809.1 + 15296 0.66 0.578518
Target:  5'- ------aGGCGC--GCGGCGAACUGCg -3'
miRNA:   3'- ugucaagCCGCGccUGCCGUUUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 14762 0.66 0.578518
Target:  5'- gGCAGcgCGcGCGaGGACGuGCugcGGCUGCg -3'
miRNA:   3'- -UGUCaaGC-CGCgCCUGC-CGu--UUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 8570 0.66 0.600513
Target:  5'- gGCAGcgacaGGCGCGacacGACGGuCAcggcGACCGUg -3'
miRNA:   3'- -UGUCaag--CCGCGC----CUGCC-GU----UUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 29207 0.67 0.535129
Target:  5'- gGCAGgUCGGaCGCGcGcAUGGCGuccaguCCGCc -3'
miRNA:   3'- -UGUCaAGCC-GCGC-C-UGCCGUuu----GGCG- -5'
26852 5' -56.5 NC_005809.1 + 21740 0.67 0.539421
Target:  5'- cACcGUUgGGCGCGGccgcguccacauaGGaCAGGCCGCc -3'
miRNA:   3'- -UGuCAAgCCGCGCCug-----------CC-GUUUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 17765 0.67 0.544803
Target:  5'- uGCAGUUCGagcagcgagucgcGCGCGaACGGauaGAAgCGCg -3'
miRNA:   3'- -UGUCAAGC-------------CGCGCcUGCCg--UUUgGCG- -5'
26852 5' -56.5 NC_005809.1 + 24557 0.67 0.503352
Target:  5'- cGCAGcgCGGCGaUGGcgaggccggccACGGuCGGGCCGUc -3'
miRNA:   3'- -UGUCaaGCCGC-GCC-----------UGCC-GUUUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 39978 0.67 0.503352
Target:  5'- --cGUUcCGGuUGCaacaGGGCGGCAAGCgCGCg -3'
miRNA:   3'- uguCAA-GCC-GCG----CCUGCCGUUUG-GCG- -5'
26852 5' -56.5 NC_005809.1 + 28393 0.67 0.49294
Target:  5'- cCAGUUCGaCGCcGGCGGCGcGgCGCc -3'
miRNA:   3'- uGUCAAGCcGCGcCUGCCGUuUgGCG- -5'
26852 5' -56.5 NC_005809.1 + 7007 0.67 0.545881
Target:  5'- aGCGGgUCGGCucGCGuGAUGgGCGuuuguGCCGCc -3'
miRNA:   3'- -UGUCaAGCCG--CGC-CUGC-CGUu----UGGCG- -5'
26852 5' -56.5 NC_005809.1 + 25293 0.67 0.49294
Target:  5'- cGCGGcgcCGGCuucGUGGACGGCAAuauccccggcuuGCCGa -3'
miRNA:   3'- -UGUCaa-GCCG---CGCCUGCCGUU------------UGGCg -5'
26852 5' -56.5 NC_005809.1 + 6535 0.67 0.49294
Target:  5'- cACAGUUCgaugcuGGCGuuGACGuaGCAGcCCGCg -3'
miRNA:   3'- -UGUCAAG------CCGCgcCUGC--CGUUuGGCG- -5'
26852 5' -56.5 NC_005809.1 + 20249 0.67 0.49294
Target:  5'- ----cUCGGCGCGuuCGGCAcGGCCaGCa -3'
miRNA:   3'- ugucaAGCCGCGCcuGCCGU-UUGG-CG- -5'
26852 5' -56.5 NC_005809.1 + 41028 0.67 0.523389
Target:  5'- aGCGGUUCGGCuuuaccaagGCcgaacugcuGGGCGGCGAAUaagggggCGCc -3'
miRNA:   3'- -UGUCAAGCCG---------CG---------CCUGCCGUUUG-------GCG- -5'
26852 5' -56.5 NC_005809.1 + 13452 0.67 0.524453
Target:  5'- uGCGGccUCGcGCGCGuGAcCGGCAGcaagucCCGCa -3'
miRNA:   3'- -UGUCa-AGC-CGCGC-CU-GCCGUUu-----GGCG- -5'
26852 5' -56.5 NC_005809.1 + 28252 0.67 0.539421
Target:  5'- gGCAGUUCagccaaGGCGCGcgccaguucagcaacGACG-UggGCCGCa -3'
miRNA:   3'- -UGUCAAG------CCGCGC---------------CUGCcGuuUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 1460 0.67 0.49294
Target:  5'- gACGGcgCGGUcgGCGGccuccUGGCAGGCCGg -3'
miRNA:   3'- -UGUCaaGCCG--CGCCu----GCCGUUUGGCg -5'
26852 5' -56.5 NC_005809.1 + 37880 0.67 0.49294
Target:  5'- gGCGGcgUCGGUGCcuuucucaccgGGGCGGCuaccuACgGCa -3'
miRNA:   3'- -UGUCa-AGCCGCG-----------CCUGCCGuu---UGgCG- -5'
26852 5' -56.5 NC_005809.1 + 1539 0.67 0.49294
Target:  5'- aGCAGUUCGGCcuUGGuaaaGcCGAACCGCu -3'
miRNA:   3'- -UGUCAAGCCGc-GCCug--CcGUUUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.