miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26852 5' -56.5 NC_005809.1 + 8778 0.66 0.556702
Target:  5'- gGCAGcacgCGGCGCacGAUGgGUcgGCCGCg -3'
miRNA:   3'- -UGUCaa--GCCGCGc-CUGC-CGuuUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 25189 0.66 0.556702
Target:  5'- aGCGGUgcgUCGGCGCGaugcaGGCAuACCu- -3'
miRNA:   3'- -UGUCA---AGCCGCGCcug--CCGUuUGGcg -5'
26852 5' -56.5 NC_005809.1 + 29270 0.66 0.556702
Target:  5'- cCGGUgUCGGgGUGGACgugguaGGCGAcgaACUGCu -3'
miRNA:   3'- uGUCA-AGCCgCGCCUG------CCGUU---UGGCG- -5'
26852 5' -56.5 NC_005809.1 + 26714 0.66 0.555617
Target:  5'- aACAGaUCGGCGCG--UGGCAccagcacgacacgGACgGCg -3'
miRNA:   3'- -UGUCaAGCCGCGCcuGCCGU-------------UUGgCG- -5'
26852 5' -56.5 NC_005809.1 + 1867 0.67 0.546961
Target:  5'- uGCAGguucagcccguggcCGGCGCuggccgGGugGGCGAACaGCa -3'
miRNA:   3'- -UGUCaa------------GCCGCG------CCugCCGUUUGgCG- -5'
26852 5' -56.5 NC_005809.1 + 26506 0.67 0.545881
Target:  5'- uACGGcgCcGCGCGcGGCGGCcacGugCGCg -3'
miRNA:   3'- -UGUCaaGcCGCGC-CUGCCGu--UugGCG- -5'
26852 5' -56.5 NC_005809.1 + 7007 0.67 0.545881
Target:  5'- aGCGGgUCGGCucGCGuGAUGgGCGuuuguGCCGCc -3'
miRNA:   3'- -UGUCaAGCCG--CGC-CUGC-CGUu----UGGCG- -5'
26852 5' -56.5 NC_005809.1 + 17765 0.67 0.544803
Target:  5'- uGCAGUUCGagcagcgagucgcGCGCGaACGGauaGAAgCGCg -3'
miRNA:   3'- -UGUCAAGC-------------CGCGCcUGCCg--UUUgGCG- -5'
26852 5' -56.5 NC_005809.1 + 630 0.67 0.541572
Target:  5'- uCAGccUCGGCGCGGgugaacgggucagGCGGgGGcuuuugguguuucuGCCGCg -3'
miRNA:   3'- uGUCa-AGCCGCGCC-------------UGCCgUU--------------UGGCG- -5'
26852 5' -56.5 NC_005809.1 + 21740 0.67 0.539421
Target:  5'- cACcGUUgGGCGCGGccgcguccacauaGGaCAGGCCGCc -3'
miRNA:   3'- -UGuCAAgCCGCGCCug-----------CC-GUUUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 28252 0.67 0.539421
Target:  5'- gGCAGUUCagccaaGGCGCGcgccaguucagcaacGACG-UggGCCGCa -3'
miRNA:   3'- -UGUCAAG------CCGCGC---------------CUGCcGuuUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 15509 0.67 0.535129
Target:  5'- uGCAGUUCuGCG-GuGAUgGGCAGGCCGa -3'
miRNA:   3'- -UGUCAAGcCGCgC-CUG-CCGUUUGGCg -5'
26852 5' -56.5 NC_005809.1 + 29207 0.67 0.535129
Target:  5'- gGCAGgUCGGaCGCGcGcAUGGCGuccaguCCGCc -3'
miRNA:   3'- -UGUCaAGCC-GCGC-C-UGCCGUuu----GGCG- -5'
26852 5' -56.5 NC_005809.1 + 12017 0.67 0.524453
Target:  5'- aGCAGcgCGGcCGUGGcCGGCGAggucuuGCCcaGCg -3'
miRNA:   3'- -UGUCaaGCC-GCGCCuGCCGUU------UGG--CG- -5'
26852 5' -56.5 NC_005809.1 + 2881 0.67 0.524453
Target:  5'- cCAGUUCGaggauguccaGCGCGGugagcGCGG-AAACCGUc -3'
miRNA:   3'- uGUCAAGC----------CGCGCC-----UGCCgUUUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 13452 0.67 0.524453
Target:  5'- uGCGGccUCGcGCGCGuGAcCGGCAGcaagucCCGCa -3'
miRNA:   3'- -UGUCa-AGC-CGCGC-CU-GCCGUUu-----GGCG- -5'
26852 5' -56.5 NC_005809.1 + 41028 0.67 0.523389
Target:  5'- aGCGGUUCGGCuuuaccaagGCcgaacugcuGGGCGGCGAAUaagggggCGCc -3'
miRNA:   3'- -UGUCAAGCCG---------CG---------CCUGCCGUUUG-------GCG- -5'
26852 5' -56.5 NC_005809.1 + 16237 0.67 0.513858
Target:  5'- uCGGUgagCGGCacgauaugGCGGAUGGCGuuGGCCucGCg -3'
miRNA:   3'- uGUCAa--GCCG--------CGCCUGCCGU--UUGG--CG- -5'
26852 5' -56.5 NC_005809.1 + 24557 0.67 0.503352
Target:  5'- cGCAGcgCGGCGaUGGcgaggccggccACGGuCGGGCCGUc -3'
miRNA:   3'- -UGUCaaGCCGC-GCC-----------UGCC-GUUUGGCG- -5'
26852 5' -56.5 NC_005809.1 + 39978 0.67 0.503352
Target:  5'- --cGUUcCGGuUGCaacaGGGCGGCAAGCgCGCg -3'
miRNA:   3'- uguCAA-GCC-GCG----CCUGCCGUUUG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.