miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26853 3' -53.6 NC_005809.1 + 41829 0.68 0.592421
Target:  5'- gACUGGAAaGACCuggCCGGCGUUGUCGGc -3'
miRNA:   3'- -UGACCUUgUUGG---GGCUGCGGUAGUUa -5'
26853 3' -53.6 NC_005809.1 + 21323 0.68 0.569688
Target:  5'- uGCUGGGcauCGACCCCGAguugaucgUGCCGggCAAUc -3'
miRNA:   3'- -UGACCUu--GUUGGGGCU--------GCGGUa-GUUA- -5'
26853 3' -53.6 NC_005809.1 + 19845 0.68 0.569688
Target:  5'- uGCUGGGGCAAUaaCGugGCCGagCAAa -3'
miRNA:   3'- -UGACCUUGUUGggGCugCGGUa-GUUa -5'
26853 3' -53.6 NC_005809.1 + 17006 0.68 0.5584
Target:  5'- --cGGcguACAACUCCGACGCCGacaUCAu- -3'
miRNA:   3'- ugaCCu--UGUUGGGGCUGCGGU---AGUua -5'
26853 3' -53.6 NC_005809.1 + 32969 0.69 0.547177
Target:  5'- uACUGGcaaGACCCgGACGCCAa---- -3'
miRNA:   3'- -UGACCuugUUGGGgCUGCGGUaguua -5'
26853 3' -53.6 NC_005809.1 + 13728 0.69 0.546058
Target:  5'- cGCUGGGACAGCUUCGGCaaguccgGCCG-CAAc -3'
miRNA:   3'- -UGACCUUGUUGGGGCUG-------CGGUaGUUa -5'
26853 3' -53.6 NC_005809.1 + 28828 0.69 0.524954
Target:  5'- cGCUGGAACAAaacaaCCCGACcuauGCC-UCGGc -3'
miRNA:   3'- -UGACCUUGUUg----GGGCUG----CGGuAGUUa -5'
26853 3' -53.6 NC_005809.1 + 41973 0.69 0.513971
Target:  5'- uGCUGGc-CGACCCgcaGGCGgCCAUCAAa -3'
miRNA:   3'- -UGACCuuGUUGGGg--CUGC-GGUAGUUa -5'
26853 3' -53.6 NC_005809.1 + 12480 0.69 0.513971
Target:  5'- cCUGGGACAagggccguggcGCCCgGGCGCCG-CAc- -3'
miRNA:   3'- uGACCUUGU-----------UGGGgCUGCGGUaGUua -5'
26853 3' -53.6 NC_005809.1 + 38280 0.69 0.503084
Target:  5'- aGCUGGuGCAguucACCgCCGACacgGCCAUCAc- -3'
miRNA:   3'- -UGACCuUGU----UGG-GGCUG---CGGUAGUua -5'
26853 3' -53.6 NC_005809.1 + 33631 0.7 0.481618
Target:  5'- uGCUGGAACAguucgGCgaacuguccacgCCCGAaGCCAUCGAg -3'
miRNA:   3'- -UGACCUUGU-----UG------------GGGCUgCGGUAGUUa -5'
26853 3' -53.6 NC_005809.1 + 33340 0.7 0.471053
Target:  5'- aACUGGAACuGCCgCCGggcGCGCCG-CAGa -3'
miRNA:   3'- -UGACCUUGuUGG-GGC---UGCGGUaGUUa -5'
26853 3' -53.6 NC_005809.1 + 37308 0.7 0.440092
Target:  5'- cGCUGGAACGacgcauugccgACCCCGACcuGCCGgcCGAa -3'
miRNA:   3'- -UGACCUUGU-----------UGGGGCUG--CGGUa-GUUa -5'
26853 3' -53.6 NC_005809.1 + 13212 0.71 0.43003
Target:  5'- gGCUGGGGCAagGCCaCCGGCGCgugguUCGAg -3'
miRNA:   3'- -UGACCUUGU--UGG-GGCUGCGgu---AGUUa -5'
26853 3' -53.6 NC_005809.1 + 40512 0.72 0.345959
Target:  5'- uGCUGGGcgACGACCCCGaggaauugcGCGCCGUg--- -3'
miRNA:   3'- -UGACCU--UGUUGGGGC---------UGCGGUAguua -5'
26853 3' -53.6 NC_005809.1 + 20136 0.73 0.304607
Target:  5'- aACUGG-ACGAgUCCGcCGCCGUCAAg -3'
miRNA:   3'- -UGACCuUGUUgGGGCuGCGGUAGUUa -5'
26853 3' -53.6 NC_005809.1 + 19040 0.75 0.253253
Target:  5'- cCUGGuAGCGGCCgCCGGCGgCGUCGAUc -3'
miRNA:   3'- uGACC-UUGUUGG-GGCUGCgGUAGUUA- -5'
26853 3' -53.6 NC_005809.1 + 28674 1.05 0.001808
Target:  5'- aACUGGAACAACCCCGACGCCAUCAAUu -3'
miRNA:   3'- -UGACCUUGUUGGGGCUGCGGUAGUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.