Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26854 | 5' | -55.5 | NC_005809.1 | + | 29057 | 0.66 | 0.612712 |
Target: 5'- gGCGGCuCGuAGGCCAucaGCGGGU-CAu- -3' miRNA: 3'- aCGUCGuGC-UCCGGU---CGCUCAuGUuc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 24955 | 0.66 | 0.59011 |
Target: 5'- aUGCGGCAaacauCGAGGCCGGUaucgACAAc -3' miRNA: 3'- -ACGUCGU-----GCUCCGGUCGcucaUGUUc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 8117 | 0.66 | 0.576615 |
Target: 5'- cUGCAcCGCGcGGCCGGCGuugguugugggcGUGCGGGu -3' miRNA: 3'- -ACGUcGUGCuCCGGUCGCu-----------CAUGUUC- -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 26447 | 0.66 | 0.567657 |
Target: 5'- cGCAGUccuacguCGGGGCCAcCGAcGUGCAGc -3' miRNA: 3'- aCGUCGu------GCUCCGGUcGCU-CAUGUUc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 12439 | 0.66 | 0.567657 |
Target: 5'- cGCGGUGC-AGGCCGGCGGcGUGu--- -3' miRNA: 3'- aCGUCGUGcUCCGGUCGCU-CAUguuc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 12827 | 0.66 | 0.567657 |
Target: 5'- aGCAGC-CGAGGCCgaguucuacGGCGuGgcCGAu -3' miRNA: 3'- aCGUCGuGCUCCGG---------UCGCuCauGUUc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 24304 | 0.66 | 0.567657 |
Target: 5'- gGCGGU--GAGGUCGGCGAGcagccGCGGGu -3' miRNA: 3'- aCGUCGugCUCCGGUCGCUCa----UGUUC- -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 39748 | 0.67 | 0.556509 |
Target: 5'- cGCuGCGCGuGGCC-GCGAGcACcuGg -3' miRNA: 3'- aCGuCGUGCuCCGGuCGCUCaUGuuC- -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 16310 | 0.67 | 0.556509 |
Target: 5'- cGC-GCACGGGa--AGCGAGUACGAc -3' miRNA: 3'- aCGuCGUGCUCcggUCGCUCAUGUUc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 8843 | 0.67 | 0.556509 |
Target: 5'- cGCAaCGCG-GGCCAGCGcGUugGc- -3' miRNA: 3'- aCGUcGUGCuCCGGUCGCuCAugUuc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 10208 | 0.67 | 0.534415 |
Target: 5'- gGCGGC-CGGGGCCucggcGGCGAccGCAGc -3' miRNA: 3'- aCGUCGuGCUCCGG-----UCGCUcaUGUUc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 38555 | 0.67 | 0.522394 |
Target: 5'- cGCGGCAUGAcgcugguGGCCGGCGcGUuuuGGg -3' miRNA: 3'- aCGUCGUGCU-------CCGGUCGCuCAuguUC- -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 14735 | 0.67 | 0.512638 |
Target: 5'- aGCAGCgGCGcGGCCGGCGccaccGCGGGc -3' miRNA: 3'- aCGUCG-UGCuCCGGUCGCuca--UGUUC- -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 32046 | 0.67 | 0.501887 |
Target: 5'- gGCGGCggaaaGCGuGGCCGGCG-GUcaGCAGu -3' miRNA: 3'- aCGUCG-----UGCuCCGGUCGCuCA--UGUUc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 3513 | 0.68 | 0.48069 |
Target: 5'- cGCAGCGCGAGaaCC--CGAGUACGAc -3' miRNA: 3'- aCGUCGUGCUCc-GGucGCUCAUGUUc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 38466 | 0.68 | 0.48069 |
Target: 5'- cUGCAGCGC-AGGCUGGCGGaaACAc- -3' miRNA: 3'- -ACGUCGUGcUCCGGUCGCUcaUGUuc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 9391 | 0.68 | 0.470256 |
Target: 5'- gUGCAGCcacugcaugucGCGcAGGCC-GCGGGcuUGCAGGu -3' miRNA: 3'- -ACGUCG-----------UGC-UCCGGuCGCUC--AUGUUC- -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 31772 | 0.68 | 0.470256 |
Target: 5'- aGCcGCGcCGAGGCgCAGC-AGUACAu- -3' miRNA: 3'- aCGuCGU-GCUCCG-GUCGcUCAUGUuc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 11511 | 0.68 | 0.459939 |
Target: 5'- gGCAGCGCcugcgcuggcguGAGGCCcuGCGAGcggGCAu- -3' miRNA: 3'- aCGUCGUG------------CUCCGGu-CGCUCa--UGUuc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 11418 | 0.68 | 0.449743 |
Target: 5'- aGCAGCgGCGA-GCCGGCG--UGCAGGu -3' miRNA: 3'- aCGUCG-UGCUcCGGUCGCucAUGUUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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