Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26854 | 5' | -55.5 | NC_005809.1 | + | 3513 | 0.68 | 0.48069 |
Target: 5'- cGCAGCGCGAGaaCC--CGAGUACGAc -3' miRNA: 3'- aCGUCGUGCUCc-GGucGCUCAUGUUc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 4047 | 0.69 | 0.419925 |
Target: 5'- cGCGGCgaGCGgcAGGCCAGCGGcc-CAGGg -3' miRNA: 3'- aCGUCG--UGC--UCCGGUCGCUcauGUUC- -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 5307 | 0.7 | 0.355247 |
Target: 5'- gGCAGguCGAGGCCGuaggccGCGAGcACGu- -3' miRNA: 3'- aCGUCguGCUCCGGU------CGCUCaUGUuc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 5749 | 0.71 | 0.313529 |
Target: 5'- -cCAGCGCGccGGgCAGCGAGUGCGc- -3' miRNA: 3'- acGUCGUGCu-CCgGUCGCUCAUGUuc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 8117 | 0.66 | 0.576615 |
Target: 5'- cUGCAcCGCGcGGCCGGCGuugguugugggcGUGCGGGu -3' miRNA: 3'- -ACGUcGUGCuCCGGUCGCu-----------CAUGUUC- -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 8843 | 0.67 | 0.556509 |
Target: 5'- cGCAaCGCG-GGCCAGCGcGUugGc- -3' miRNA: 3'- aCGUcGUGCuCCGGUCGCuCAugUuc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 9391 | 0.68 | 0.470256 |
Target: 5'- gUGCAGCcacugcaugucGCGcAGGCC-GCGGGcuUGCAGGu -3' miRNA: 3'- -ACGUCG-----------UGC-UCCGGuCGCUC--AUGUUC- -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 10208 | 0.67 | 0.534415 |
Target: 5'- gGCGGC-CGGGGCCucggcGGCGAccGCAGc -3' miRNA: 3'- aCGUCGuGCUCCGG-----UCGCUcaUGUUc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 11418 | 0.68 | 0.449743 |
Target: 5'- aGCAGCgGCGA-GCCGGCG--UGCAGGu -3' miRNA: 3'- aCGUCG-UGCUcCGGUCGCucAUGUUC- -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 11511 | 0.68 | 0.459939 |
Target: 5'- gGCAGCGCcugcgcuggcguGAGGCCcuGCGAGcggGCAu- -3' miRNA: 3'- aCGUCGUG------------CUCCGGu-CGCUCa--UGUuc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 12017 | 0.76 | 0.138595 |
Target: 5'- aGCAGCGCGGccguGGCCGGCGAGg----- -3' miRNA: 3'- aCGUCGUGCU----CCGGUCGCUCauguuc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 12439 | 0.66 | 0.567657 |
Target: 5'- cGCGGUGC-AGGCCGGCGGcGUGu--- -3' miRNA: 3'- aCGUCGUGcUCCGGUCGCU-CAUguuc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 12827 | 0.66 | 0.567657 |
Target: 5'- aGCAGC-CGAGGCCgaguucuacGGCGuGgcCGAu -3' miRNA: 3'- aCGUCGuGCUCCGG---------UCGCuCauGUUc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 13298 | 0.74 | 0.210934 |
Target: 5'- uUGCAGCGCGccgGGGCCGGCGuuGUAgGc- -3' miRNA: 3'- -ACGUCGUGC---UCCGGUCGCu-CAUgUuc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 13647 | 0.71 | 0.321567 |
Target: 5'- gGCAGCgGCGAGGCCcuggcuuuGUGGG-ACGAGu -3' miRNA: 3'- aCGUCG-UGCUCCGGu-------CGCUCaUGUUC- -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 14018 | 0.72 | 0.275629 |
Target: 5'- cGCGcCGCGAuGGCCGGCGGccGCAAGg -3' miRNA: 3'- aCGUcGUGCU-CCGGUCGCUcaUGUUC- -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 14735 | 0.67 | 0.512638 |
Target: 5'- aGCAGCgGCGcGGCCGGCGccaccGCGGGc -3' miRNA: 3'- aCGUCG-UGCuCCGGUCGCuca--UGUUC- -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 14820 | 0.75 | 0.168999 |
Target: 5'- aGCcGgACGAGGgCAGCGAGUugcGCGAGg -3' miRNA: 3'- aCGuCgUGCUCCgGUCGCUCA---UGUUC- -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 15078 | 0.69 | 0.439673 |
Target: 5'- gGCGGC-CGAGGCCGccggcauccucGCGuGGUGCGu- -3' miRNA: 3'- aCGUCGuGCUCCGGU-----------CGC-UCAUGUuc -5' |
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26854 | 5' | -55.5 | NC_005809.1 | + | 16301 | 0.73 | 0.23509 |
Target: 5'- cGCGauGCGCGAgccgaccaGGCCGGCGGGUGCc-- -3' miRNA: 3'- aCGU--CGUGCU--------CCGGUCGCUCAUGuuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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