Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26857 | 3' | -50.3 | NC_005809.1 | + | 12574 | 0.66 | 0.902516 |
Target: 5'- gCAGUUgGAGCAcgaugGCCCGU-UCGACGg -3' miRNA: 3'- -GUCAG-CUUGUaa---CGGGCGuAGUUGCg -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 15034 | 0.73 | 0.515338 |
Target: 5'- -cGUUGGuguugGCGaUGCCCGCGUUGAUGCg -3' miRNA: 3'- guCAGCU-----UGUaACGGGCGUAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 15986 | 0.68 | 0.807044 |
Target: 5'- -uGUCGAACAggUGCgCCGC----GCGCa -3' miRNA: 3'- guCAGCUUGUa-ACG-GGCGuaguUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 17434 | 0.66 | 0.909527 |
Target: 5'- --cUUGAGCAgugGCCCcgccaGCAUCGAgGCc -3' miRNA: 3'- gucAGCUUGUaa-CGGG-----CGUAGUUgCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 17897 | 0.7 | 0.675881 |
Target: 5'- uGGgcgUGGACGUgGCCCGCGgcgGGCGCg -3' miRNA: 3'- gUCa--GCUUGUAaCGGGCGUag-UUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 18744 | 0.67 | 0.844446 |
Target: 5'- -cGUCGAACGcgaccaccuuuUUGCCgGCgauuucuuccaucGUCAGCGUc -3' miRNA: 3'- guCAGCUUGU-----------AACGGgCG-------------UAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 18911 | 0.68 | 0.816958 |
Target: 5'- aGGUCGAugAggucggcGCCCGCGcUGGCGUu -3' miRNA: 3'- gUCAGCUugUaa-----CGGGCGUaGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 20275 | 0.67 | 0.848982 |
Target: 5'- -uGUUGGccguCGUUGCCCGCAccaguagcggguugcUCGGCGg -3' miRNA: 3'- guCAGCUu---GUAACGGGCGU---------------AGUUGCg -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 20617 | 0.67 | 0.854341 |
Target: 5'- uCGGUCGuuccgcGCAcugUGCCCGCguugggccuugGUCGGCGg -3' miRNA: 3'- -GUCAGCu-----UGUa--ACGGGCG-----------UAGUUGCg -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 21101 | 0.7 | 0.687379 |
Target: 5'- -cGUCGGugAgcgcguuuugcUUGCUgGUAUCGACGCu -3' miRNA: 3'- guCAGCUugU-----------AACGGgCGUAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 21202 | 0.66 | 0.879702 |
Target: 5'- uGGUCuGcGCGUUGCuuGCGgauaAGCGCc -3' miRNA: 3'- gUCAG-CuUGUAACGggCGUag--UUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 21259 | 0.69 | 0.765474 |
Target: 5'- gGGUCGA----UGCCCaGCAugUCGGCGUa -3' miRNA: 3'- gUCAGCUuguaACGGG-CGU--AGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 22052 | 0.68 | 0.816958 |
Target: 5'- gCGGUCGucGCGcUUGCUCGgGUCGcggucgGCGCg -3' miRNA: 3'- -GUCAGCu-UGU-AACGGGCgUAGU------UGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 24785 | 0.69 | 0.732651 |
Target: 5'- gGGUCGuccuCGaUGCCCGCGUUGAaguCGCc -3' miRNA: 3'- gUCAGCuu--GUaACGGGCGUAGUU---GCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 26844 | 0.68 | 0.807044 |
Target: 5'- -uGUCGAGCGcaugGCCuCGCGccaguUCGAUGCc -3' miRNA: 3'- guCAGCUUGUaa--CGG-GCGU-----AGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 27173 | 0.68 | 0.786616 |
Target: 5'- uCGGUCGuccgGCAUcuucgccgGCCCGCAcgCgGACGCg -3' miRNA: 3'- -GUCAGCu---UGUAa-------CGGGCGUa-G-UUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 27517 | 1.13 | 0.001274 |
Target: 5'- uCAGUCGAACAUUGCCCGCAUCAACGCg -3' miRNA: 3'- -GUCAGCUUGUAACGGGCGUAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 30708 | 0.68 | 0.785575 |
Target: 5'- uGG-CGGGCAUgGCUuucuccaucggaaUGCGUCAACGCa -3' miRNA: 3'- gUCaGCUUGUAaCGG-------------GCGUAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 31827 | 0.68 | 0.780344 |
Target: 5'- aAGUCGAGCGc-GCCCuuggcgagcagcaagGCGaCGACGCa -3' miRNA: 3'- gUCAGCUUGUaaCGGG---------------CGUaGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 32846 | 0.68 | 0.786616 |
Target: 5'- ---aCGAGCAguucGCCCGCGgcuUCGAgGCg -3' miRNA: 3'- gucaGCUUGUaa--CGGGCGU---AGUUgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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