Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26857 | 3' | -50.3 | NC_005809.1 | + | 27517 | 1.13 | 0.001274 |
Target: 5'- uCAGUCGAACAUUGCCCGCAUCAACGCg -3' miRNA: 3'- -GUCAGCUUGUAACGGGCGUAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 10852 | 0.75 | 0.410389 |
Target: 5'- uGGUCGAGCAg-GCCCuGCguggcuucgGUCGGCGCg -3' miRNA: 3'- gUCAGCUUGUaaCGGG-CG---------UAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 6539 | 0.73 | 0.50431 |
Target: 5'- gGGUCGu-CGUcGCCCgaaucgccagGCGUCAGCGCa -3' miRNA: 3'- gUCAGCuuGUAaCGGG----------CGUAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 15034 | 0.73 | 0.515338 |
Target: 5'- -cGUUGGuguugGCGaUGCCCGCGUUGAUGCg -3' miRNA: 3'- guCAGCU-----UGUaACGGGCGUAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 34009 | 0.72 | 0.560339 |
Target: 5'- -uGUCGcGCcugucgcUGCCCGcCAUCGGCGCg -3' miRNA: 3'- guCAGCuUGua-----ACGGGC-GUAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 9192 | 0.71 | 0.629552 |
Target: 5'- -cGUCG-ACGUUgGCCUGCucggCGGCGCg -3' miRNA: 3'- guCAGCuUGUAA-CGGGCGua--GUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 17897 | 0.7 | 0.675881 |
Target: 5'- uGGgcgUGGACGUgGCCCGCGgcgGGCGCg -3' miRNA: 3'- gUCa--GCUUGUAaCGGGCGUag-UUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 21101 | 0.7 | 0.687379 |
Target: 5'- -cGUCGGugAgcgcguuuugcUUGCUgGUAUCGACGCu -3' miRNA: 3'- guCAGCUugU-----------AACGGgCGUAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 5007 | 0.7 | 0.698818 |
Target: 5'- aGGUCGGcGCA--GUCCGCuuUCAGCGCc -3' miRNA: 3'- gUCAGCU-UGUaaCGGGCGu-AGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 8666 | 0.7 | 0.698818 |
Target: 5'- gCGGUCG-GCAUUGCgUGCcgC-GCGCa -3' miRNA: 3'- -GUCAGCuUGUAACGgGCGuaGuUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 4253 | 0.7 | 0.710186 |
Target: 5'- gUAGUCGG----UGCCgGcCGUCAGCGCc -3' miRNA: 3'- -GUCAGCUuguaACGGgC-GUAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 34527 | 0.7 | 0.710186 |
Target: 5'- uGGUCGAGCAgcgGUUgaGCGUCGAgGCu -3' miRNA: 3'- gUCAGCUUGUaa-CGGg-CGUAGUUgCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 42053 | 0.69 | 0.721467 |
Target: 5'- aCGGcCGAACAgaaccGCCUGCAagccgccgCGGCGCa -3' miRNA: 3'- -GUCaGCUUGUaa---CGGGCGUa-------GUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 24785 | 0.69 | 0.732651 |
Target: 5'- gGGUCGuccuCGaUGCCCGCGUUGAaguCGCc -3' miRNA: 3'- gUCAGCuu--GUaACGGGCGUAGUU---GCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 2818 | 0.69 | 0.754667 |
Target: 5'- -cGUCGGGCcaggUGCUCGCggCcACGCg -3' miRNA: 3'- guCAGCUUGua--ACGGGCGuaGuUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 5819 | 0.69 | 0.754667 |
Target: 5'- aUAGUCGGGCAUgGCgUGCcgCAGCa- -3' miRNA: 3'- -GUCAGCUUGUAaCGgGCGuaGUUGcg -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 21259 | 0.69 | 0.765474 |
Target: 5'- gGGUCGA----UGCCCaGCAugUCGGCGUa -3' miRNA: 3'- gUCAGCUuguaACGGG-CGU--AGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 31827 | 0.68 | 0.780344 |
Target: 5'- aAGUCGAGCGc-GCCCuuggcgagcagcaagGCGaCGACGCa -3' miRNA: 3'- gUCAGCUUGUaaCGGG---------------CGUaGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 30708 | 0.68 | 0.785575 |
Target: 5'- uGG-CGGGCAUgGCUuucuccaucggaaUGCGUCAACGCa -3' miRNA: 3'- gUCaGCUUGUAaCGG-------------GCGUAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 11075 | 0.68 | 0.786616 |
Target: 5'- --cUCGAACG-UGUCCGgGUCGcGCGCg -3' miRNA: 3'- gucAGCUUGUaACGGGCgUAGU-UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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