Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26857 | 3' | -50.3 | NC_005809.1 | + | 2272 | 0.67 | 0.845358 |
Target: 5'- -uGUCGAucaucgcguACAgUGCCgCGCgGUCGAUGCu -3' miRNA: 3'- guCAGCU---------UGUaACGG-GCG-UAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 18744 | 0.67 | 0.844446 |
Target: 5'- -cGUCGAACGcgaccaccuuuUUGCCgGCgauuucuuccaucGUCAGCGUc -3' miRNA: 3'- guCAGCUUGU-----------AACGGgCG-------------UAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 8493 | 0.67 | 0.836127 |
Target: 5'- uGGUCG-GCAUaGUCCaCGUCGAUGCc -3' miRNA: 3'- gUCAGCuUGUAaCGGGcGUAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 4844 | 0.67 | 0.83519 |
Target: 5'- gUAGUCGAugAccauaggUUGCCCG-GUCAggucguugcccaGCGCg -3' miRNA: 3'- -GUCAGCUugU-------AACGGGCgUAGU------------UGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 38856 | 0.67 | 0.825696 |
Target: 5'- ---gCGAGCAUgagcggaUGCgCCGCAUggggCAGCGCg -3' miRNA: 3'- gucaGCUUGUA-------ACG-GGCGUA----GUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 35193 | 0.68 | 0.816958 |
Target: 5'- aGGUCGccGCggUGCCCGCcgCuggacgaacGACGCc -3' miRNA: 3'- gUCAGCu-UGuaACGGGCGuaG---------UUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 22052 | 0.68 | 0.816958 |
Target: 5'- gCGGUCGucGCGcUUGCUCGgGUCGcggucgGCGCg -3' miRNA: 3'- -GUCAGCu-UGU-AACGGGCgUAGU------UGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 18911 | 0.68 | 0.816958 |
Target: 5'- aGGUCGAugAggucggcGCCCGCGcUGGCGUu -3' miRNA: 3'- gUCAGCUugUaa-----CGGGCGUaGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 15986 | 0.68 | 0.807044 |
Target: 5'- -uGUCGAACAggUGCgCCGC----GCGCa -3' miRNA: 3'- guCAGCUUGUa-ACG-GGCGuaguUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 26844 | 0.68 | 0.807044 |
Target: 5'- -uGUCGAGCGcaugGCCuCGCGccaguUCGAUGCc -3' miRNA: 3'- guCAGCUUGUaa--CGG-GCGU-----AGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 3269 | 0.68 | 0.796926 |
Target: 5'- ----gGAACAUUuCCCGCG-CAACGCc -3' miRNA: 3'- gucagCUUGUAAcGGGCGUaGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 27173 | 0.68 | 0.786616 |
Target: 5'- uCGGUCGuccgGCAUcuucgccgGCCCGCAcgCgGACGCg -3' miRNA: 3'- -GUCAGCu---UGUAa-------CGGGCGUa-G-UUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 11075 | 0.68 | 0.786616 |
Target: 5'- --cUCGAACG-UGUCCGgGUCGcGCGCg -3' miRNA: 3'- gucAGCUUGUaACGGGCgUAGU-UGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 32846 | 0.68 | 0.786616 |
Target: 5'- ---aCGAGCAguucGCCCGCGgcuUCGAgGCg -3' miRNA: 3'- gucaGCUUGUaa--CGGGCGU---AGUUgCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 30708 | 0.68 | 0.785575 |
Target: 5'- uGG-CGGGCAUgGCUuucuccaucggaaUGCGUCAACGCa -3' miRNA: 3'- gUCaGCUUGUAaCGG-------------GCGUAGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 31827 | 0.68 | 0.780344 |
Target: 5'- aAGUCGAGCGc-GCCCuuggcgagcagcaagGCGaCGACGCa -3' miRNA: 3'- gUCAGCUUGUaaCGGG---------------CGUaGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 21259 | 0.69 | 0.765474 |
Target: 5'- gGGUCGA----UGCCCaGCAugUCGGCGUa -3' miRNA: 3'- gUCAGCUuguaACGGG-CGU--AGUUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 2818 | 0.69 | 0.754667 |
Target: 5'- -cGUCGGGCcaggUGCUCGCggCcACGCg -3' miRNA: 3'- guCAGCUUGua--ACGGGCGuaGuUGCG- -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 5819 | 0.69 | 0.754667 |
Target: 5'- aUAGUCGGGCAUgGCgUGCcgCAGCa- -3' miRNA: 3'- -GUCAGCUUGUAaCGgGCGuaGUUGcg -5' |
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26857 | 3' | -50.3 | NC_005809.1 | + | 24785 | 0.69 | 0.732651 |
Target: 5'- gGGUCGuccuCGaUGCCCGCGUUGAaguCGCc -3' miRNA: 3'- gUCAGCuu--GUaACGGGCGUAGUU---GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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