miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26857 5' -52.9 NC_005809.1 + 7766 0.67 0.725069
Target:  5'- gCAGCACCGGCGCGaucuGCGCCggCGu-- -3'
miRNA:   3'- -GUUGUGGUUGCGCc---UGUGGuaGCuca -5'
26857 5' -52.9 NC_005809.1 + 40995 0.67 0.714029
Target:  5'- uGugGCagGACGUGGaggacuugaGCACCAUCGAGc -3'
miRNA:   3'- gUugUGg-UUGCGCC---------UGUGGUAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 25159 0.67 0.714029
Target:  5'- uCAAgGgCGACGUGGGCGCCGcugaaUCGAa- -3'
miRNA:   3'- -GUUgUgGUUGCGCCUGUGGU-----AGCUca -5'
26857 5' -52.9 NC_005809.1 + 23751 0.67 0.714029
Target:  5'- gCAGCGCC-AUGCcGGCGCCAcCGGGc -3'
miRNA:   3'- -GUUGUGGuUGCGcCUGUGGUaGCUCa -5'
26857 5' -52.9 NC_005809.1 + 30607 0.67 0.702903
Target:  5'- -cGCACgaCAACGUGGACAacaugaccggCAUCGAGUc -3'
miRNA:   3'- guUGUG--GUUGCGCCUGUg---------GUAGCUCA- -5'
26857 5' -52.9 NC_005809.1 + 37333 0.67 0.702903
Target:  5'- cCAACGCCAACGUcaACACCGUgGcGUc -3'
miRNA:   3'- -GUUGUGGUUGCGccUGUGGUAgCuCA- -5'
26857 5' -52.9 NC_005809.1 + 14710 0.67 0.691704
Target:  5'- gAugGCgAGCGCGGACACguUCuuGAGc -3'
miRNA:   3'- gUugUGgUUGCGCCUGUGguAG--CUCa -5'
26857 5' -52.9 NC_005809.1 + 18064 0.67 0.691704
Target:  5'- aCGugAUCGGCGUGGGCGCCAgccccuaCGAc- -3'
miRNA:   3'- -GUugUGGUUGCGCCUGUGGUa------GCUca -5'
26857 5' -52.9 NC_005809.1 + 37837 0.68 0.680443
Target:  5'- cCGugGCCGAgaacauCGCGGuCAUCAUCGAa- -3'
miRNA:   3'- -GUugUGGUU------GCGCCuGUGGUAGCUca -5'
26857 5' -52.9 NC_005809.1 + 8443 0.68 0.657785
Target:  5'- gAACAUCGGCGCGauguCGgCGUCGAGg -3'
miRNA:   3'- gUUGUGGUUGCGCcu--GUgGUAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 38847 0.68 0.657785
Target:  5'- cCAcCACCGGCGUgaacggcacGGGCGCCA-CGAGc -3'
miRNA:   3'- -GUuGUGGUUGCG---------CCUGUGGUaGCUCa -5'
26857 5' -52.9 NC_005809.1 + 31498 0.68 0.646412
Target:  5'- -cGCGCgCGACcCGGACACguUCGAGc -3'
miRNA:   3'- guUGUG-GUUGcGCCUGUGguAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 33988 0.68 0.646412
Target:  5'- cCAGCACCAggccgcacGCGCGGccuacgACGCCcaggaugagGUCGAGc -3'
miRNA:   3'- -GUUGUGGU--------UGCGCC------UGUGG---------UAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 17783 0.68 0.646412
Target:  5'- gCGACuuCAACGCGGGCA---UCGAGg -3'
miRNA:   3'- -GUUGugGUUGCGCCUGUgguAGCUCa -5'
26857 5' -52.9 NC_005809.1 + 28398 0.68 0.646412
Target:  5'- uCGACGCCGGCgGCGcGGCGCCAguaGAu- -3'
miRNA:   3'- -GUUGUGGUUG-CGC-CUGUGGUag-CUca -5'
26857 5' -52.9 NC_005809.1 + 461 0.68 0.635024
Target:  5'- ---gGCCAGCuuGCGGGCGCUGUCGcGGUc -3'
miRNA:   3'- guugUGGUUG--CGCCUGUGGUAGC-UCA- -5'
26857 5' -52.9 NC_005809.1 + 4676 0.69 0.612253
Target:  5'- gGGCACCAGCGCgccGGAUAgCGcggCGAGa -3'
miRNA:   3'- gUUGUGGUUGCG---CCUGUgGUa--GCUCa -5'
26857 5' -52.9 NC_005809.1 + 8877 0.69 0.600889
Target:  5'- aCGAaGCgGGCGCGGGCAUCAUUGuGa -3'
miRNA:   3'- -GUUgUGgUUGCGCCUGUGGUAGCuCa -5'
26857 5' -52.9 NC_005809.1 + 5108 0.69 0.600889
Target:  5'- cCAGCGuCCggUGCGGcugGCGCCGUUGAa- -3'
miRNA:   3'- -GUUGU-GGuuGCGCC---UGUGGUAGCUca -5'
26857 5' -52.9 NC_005809.1 + 36958 0.69 0.589555
Target:  5'- cCAACAUCGACGcCGuGGCuACCAaCGAGg -3'
miRNA:   3'- -GUUGUGGUUGC-GC-CUG-UGGUaGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.