Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26858 | 3' | -59.9 | NC_005809.1 | + | 1225 | 0.66 | 0.411125 |
Target: 5'- -aUGGCCGAUGaGGCGGUcgaaaGCGgugUCGa -3' miRNA: 3'- ggACCGGCUACgCCGCCA-----CGUa--GGCg -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 23770 | 0.68 | 0.32622 |
Target: 5'- aCCgGGCCGAUGCGccGCGGcuacgaagaUGgAUuCCGUg -3' miRNA: 3'- -GGaCCGGCUACGC--CGCC---------ACgUA-GGCG- -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 1709 | 0.67 | 0.342114 |
Target: 5'- gCCgugGGCCGGcgUGcCGGCGaGgGCGUCCa- -3' miRNA: 3'- -GGa--CCGGCU--AC-GCCGC-CaCGUAGGcg -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 37212 | 0.67 | 0.342114 |
Target: 5'- cCCUgGGCgCGGUGCaGGCGGccacGCAg-CGCg -3' miRNA: 3'- -GGA-CCG-GCUACG-CCGCCa---CGUagGCG- -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 13485 | 0.67 | 0.356057 |
Target: 5'- aCCUGGgCGAUGCcgaccgcgccuuugGGCGaGguaagcgguuUGCcGUCCGCg -3' miRNA: 3'- -GGACCgGCUACG--------------CCGC-C----------ACG-UAGGCG- -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 25785 | 0.67 | 0.356057 |
Target: 5'- -aUGGCCgcGAUGCGcGCGGcGCGcucgguaucguugaUCUGCa -3' miRNA: 3'- ggACCGG--CUACGC-CGCCaCGU--------------AGGCG- -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 11517 | 0.67 | 0.358559 |
Target: 5'- gCCUGcGCUGGcgugaggcccUGCGaGCGG-GCAUCCu- -3' miRNA: 3'- -GGAC-CGGCU----------ACGC-CGCCaCGUAGGcg -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 35184 | 0.66 | 0.402036 |
Target: 5'- gCUGGUgGAaggucGCcGCGGUGCccgCCGCu -3' miRNA: 3'- gGACCGgCUa----CGcCGCCACGua-GGCG- -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 36229 | 0.66 | 0.402036 |
Target: 5'- gCCUucgGGCCGGgcgcuuuggcUGgGGCGGaacGCG-CCGCg -3' miRNA: 3'- -GGA---CCGGCU----------ACgCCGCCa--CGUaGGCG- -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 8625 | 0.68 | 0.318481 |
Target: 5'- uUCUcGGCCGcUGCGGUGGcgagGUcgCCGg -3' miRNA: 3'- -GGA-CCGGCuACGCCGCCa---CGuaGGCg -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 21584 | 0.68 | 0.310881 |
Target: 5'- --cGGCCacuucgGUGGCGGU-CAUCUGCg -3' miRNA: 3'- ggaCCGGcua---CGCCGCCAcGUAGGCG- -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 35999 | 0.68 | 0.303419 |
Target: 5'- cCCUGGCCGAgGCGGaUGGcaaGCccuaCGCg -3' miRNA: 3'- -GGACCGGCUaCGCC-GCCa--CGuag-GCG- -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 14578 | 0.75 | 0.105752 |
Target: 5'- aCCgGGCUGAUGcCGGCGGccgAUCCGCu -3' miRNA: 3'- -GGaCCGGCUAC-GCCGCCacgUAGGCG- -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 9317 | 0.72 | 0.163696 |
Target: 5'- aCCUGGCggcgcacguCGgcGCGGCGGgcggcgGCAUCCu- -3' miRNA: 3'- -GGACCG---------GCuaCGCCGCCa-----CGUAGGcg -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 42103 | 0.71 | 0.197108 |
Target: 5'- aCUGGCgauuguCGAaGCGGUGGUGCG-CgGCg -3' miRNA: 3'- gGACCG------GCUaCGCCGCCACGUaGgCG- -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 14836 | 0.71 | 0.207694 |
Target: 5'- cCCaGGUCGAUGCcguuGGCGGccaGCG-CCGCa -3' miRNA: 3'- -GGaCCGGCUACG----CCGCCa--CGUaGGCG- -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 985 | 0.7 | 0.218767 |
Target: 5'- aCUUGGCCGcc-UGGCGGUGCcgugguucaCCGCa -3' miRNA: 3'- -GGACCGGCuacGCCGCCACGua-------GGCG- -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 4287 | 0.7 | 0.224491 |
Target: 5'- -aUGGCCG-UGuCGGCGGUGaa-CUGCa -3' miRNA: 3'- ggACCGGCuAC-GCCGCCACguaGGCG- -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 11182 | 0.69 | 0.281864 |
Target: 5'- gCUGGUCGGccGUGGUgauGGUGCGgucaaugCCGCg -3' miRNA: 3'- gGACCGGCUa-CGCCG---CCACGUa------GGCG- -5' |
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26858 | 3' | -59.9 | NC_005809.1 | + | 19478 | 0.69 | 0.288912 |
Target: 5'- gCUUGcGCCaGGUGcCGGUGG-GCAggCCGCu -3' miRNA: 3'- -GGAC-CGG-CUAC-GCCGCCaCGUa-GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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