miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26858 3' -59.9 NC_005809.1 + 35999 0.68 0.303419
Target:  5'- cCCUGGCCGAgGCGGaUGGcaaGCccuaCGCg -3'
miRNA:   3'- -GGACCGGCUaCGCC-GCCa--CGuag-GCG- -5'
26858 3' -59.9 NC_005809.1 + 12685 0.68 0.295372
Target:  5'- gCCUGucauGCCGGgggGgGGUGGUGCuagacccGUUCGCa -3'
miRNA:   3'- -GGAC----CGGCUa--CgCCGCCACG-------UAGGCG- -5'
26858 3' -59.9 NC_005809.1 + 41751 0.68 0.293927
Target:  5'- aCCUGGCCGAcguucggcaagggcUGgGcGCGGcGCGU-CGCc -3'
miRNA:   3'- -GGACCGGCU--------------ACgC-CGCCaCGUAgGCG- -5'
26858 3' -59.9 NC_005809.1 + 19478 0.69 0.288912
Target:  5'- gCUUGcGCCaGGUGcCGGUGG-GCAggCCGCu -3'
miRNA:   3'- -GGAC-CGG-CUAC-GCCGCCaCGUa-GGCG- -5'
26858 3' -59.9 NC_005809.1 + 11182 0.69 0.281864
Target:  5'- gCUGGUCGGccGUGGUgauGGUGCGgucaaugCCGCg -3'
miRNA:   3'- gGACCGGCUa-CGCCG---CCACGUa------GGCG- -5'
26858 3' -59.9 NC_005809.1 + 24722 0.69 0.274954
Target:  5'- aCCUGGgCGAcgaggccacgGUGGCGG-GCAUcaacCCGCc -3'
miRNA:   3'- -GGACCgGCUa---------CGCCGCCaCGUA----GGCG- -5'
26858 3' -59.9 NC_005809.1 + 13552 0.69 0.26818
Target:  5'- aCCUGGCCGAaGC-GCGGcGCcuggUCGCc -3'
miRNA:   3'- -GGACCGGCUaCGcCGCCaCGua--GGCG- -5'
26858 3' -59.9 NC_005809.1 + 9648 0.69 0.261541
Target:  5'- cCCUGGCCGAacagccagccgUGCaGGCcGUGg--CCGCa -3'
miRNA:   3'- -GGACCGGCU-----------ACG-CCGcCACguaGGCG- -5'
26858 3' -59.9 NC_005809.1 + 4287 0.7 0.224491
Target:  5'- -aUGGCCG-UGuCGGCGGUGaa-CUGCa -3'
miRNA:   3'- ggACCGGCuAC-GCCGCCACguaGGCG- -5'
26858 3' -59.9 NC_005809.1 + 985 0.7 0.218767
Target:  5'- aCUUGGCCGcc-UGGCGGUGCcgugguucaCCGCa -3'
miRNA:   3'- -GGACCGGCuacGCCGCCACGua-------GGCG- -5'
26858 3' -59.9 NC_005809.1 + 14836 0.71 0.207694
Target:  5'- cCCaGGUCGAUGCcguuGGCGGccaGCG-CCGCa -3'
miRNA:   3'- -GGaCCGGCUACG----CCGCCa--CGUaGGCG- -5'
26858 3' -59.9 NC_005809.1 + 42103 0.71 0.197108
Target:  5'- aCUGGCgauuguCGAaGCGGUGGUGCG-CgGCg -3'
miRNA:   3'- gGACCG------GCUaCGCCGCCACGUaGgCG- -5'
26858 3' -59.9 NC_005809.1 + 32699 0.72 0.168137
Target:  5'- gCCUGGCCGAgaagcaGCGcGcCGGUGCca-CGCu -3'
miRNA:   3'- -GGACCGGCUa-----CGC-C-GCCACGuagGCG- -5'
26858 3' -59.9 NC_005809.1 + 9317 0.72 0.163696
Target:  5'- aCCUGGCggcgcacguCGgcGCGGCGGgcggcgGCAUCCu- -3'
miRNA:   3'- -GGACCG---------GCuaCGCCGCCa-----CGUAGGcg -5'
26858 3' -59.9 NC_005809.1 + 31599 0.73 0.151
Target:  5'- gCCUGGCCGAacagGUGGCcgcaguguccccGGcUGUcgCCGCg -3'
miRNA:   3'- -GGACCGGCUa---CGCCG------------CC-ACGuaGGCG- -5'
26858 3' -59.9 NC_005809.1 + 25129 0.73 0.135465
Target:  5'- aCCUGGCCucGAUGCuGGCGGgGCcaCUGCu -3'
miRNA:   3'- -GGACCGG--CUACG-CCGCCaCGuaGGCG- -5'
26858 3' -59.9 NC_005809.1 + 14578 0.75 0.105752
Target:  5'- aCCgGGCUGAUGcCGGCGGccgAUCCGCu -3'
miRNA:   3'- -GGaCCGGCUAC-GCCGCCacgUAGGCG- -5'
26858 3' -59.9 NC_005809.1 + 14352 0.75 0.099757
Target:  5'- gCUGGUucgCGGUGUccuggaaGGCGGggGCAUCCGCg -3'
miRNA:   3'- gGACCG---GCUACG-------CCGCCa-CGUAGGCG- -5'
26858 3' -59.9 NC_005809.1 + 26977 0.96 0.002765
Target:  5'- uCCUGGCCGAUG-GcGCGGUGCAUCCGCa -3'
miRNA:   3'- -GGACCGGCUACgC-CGCCACGUAGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.